SCN Proteipedia

Hg_chrom6_TN10mRNA_12595

Organism: Heterodera glycines Gene Locus: chr6:7479194-7485578 Feature type: polypeptide

Protein Sequence

Length: 598

Skip signal peptide

COMPOSITION	Ala	Asn	Asp	Cys	Glu	Gln	Gly	His	Ile	Leu	Lys	Met	Phe	Pro	Arg	Ser	Thr	Val	Trp	Tyr	Xaa
ABUNDANCE	1.283	0.894	0.578	0.288	0.697	3.473	0.916	1.505	0.557	0.768	0.608	2.951	1.115	1.544	0.614	0.836	0.795	0.659	1.029	1.18	0.0

No JSON data available for plots.

Features

GENOMICS	Gene Name	Nested Gene	(host gene)	Average	TN7	TN8	TN10	TN20	TN22	MM26	OP50	PA3	X12
	Hg_chrom6_TN10gene_11862	—	—	1.222	1.000	1.000	1.000	1.000	1.000	1.000	2.000	2.000	1.000

EFFECTORS	SCN putative	SCN known (N)	SCN known (P)	BCN known	BCN putative	Effector Islands	Cluster Name	(score)
	—	—	—	—	—	—	24-J3_Female	1.000

SECRETION	Secretion	DL-signals	DL-localization	Localizer	L-nucleus	L-mitochondria	(score)	L-chloroplast	(score)	Signal Peptide	(score_v5)	(score_v6)	(TM_v5)	(TM_v6)	nucleus	mitochondrion	plastid	cytoplasm	endoplasmic_reticulum	lysosome_vacuole	golgi_apparatus	peroxisome	peroxisome	extracellular
	not_secreted	nuclear_localization_signal	nucleus	—	KKRK,KRKL,KRQK	40-73	0.893	—	—	—	—	0.000	—	—	0.696	0.116	0.037	0.429	0.089	0.163	0.095	0.029	0.168	0.123

HOMOLOGY	Orthogroup	(SCN counts)	(BCN counts)	(BCN genes)	BCN hits	C. elegans hits	SP best hit	NR best hit	HGT Donor	HGT Index
	OG0001368	5.000	0.000	0.000	—	—	Q6P8B3.1 Speckle-type POZ protein [Xenopus tropicalis]	2CR2_A Chain A, Speckle-type POZ protein [Homo sapiens]	No	0.000

FUNCTIONAL	TF	GO terms	DeepGoPlus	InterPro	SMART	Pfam	FunFam	Panther
	—	GO:0005515	GO:0008150_0.964\|GO:0005575_0.923\|GO:0003674_0.892\|GO:0005488_0.876\|GO:0005515_0.827\|GO:0008152_0.810\|GO:0043170_0.809\|GO:0044238_0.803\|GO:0110165_0.749\|GO:0019538_0.729\|GO:0009056_0.718\|GO:0009057_0.704\|GO:0036211_0.700\|GO:0043412_0.700\|GO:0065007_0.698\|GO:0050789_0.692\|GO:0005622_0.687\|GO:0006508_0.686\|GO:0042802_0.685\|GO:0030163_0.683\|GO:0016567_0.682\|GO:0032446_0.682\|GO:0043687_0.682\|GO:0070647_0.682\|GO:0051603_0.677\|GO:0043632_0.676\|GO:0006511_0.675\|GO:0010498_0.675\|GO:0019941_0.675\|GO:0043161_0.670\|GO:0016020_0.663\|GO:0032991_0.648\|GO:0043226_0.643\|GO:0043229_0.618\|GO:0019222_0.606\|GO:0080090_0.606\|GO:0060255_0.601\|GO:0043227_0.584\|GO:0048519_0.570\|GO:0043231_0.560\|GO:1902494_0.560\|GO:0140535_0.549\|GO:1990234_0.547\|GO:0000151_0.545\|GO:0031461_0.540\|GO:0031463_0.540\|GO:0005634_0.513	IPR002083+59-189_61-170_62-189+\|IPR008974+57-193+	SM00061+61-170+	PF22486+62-189+MATH_domain	G3DSA:2.60.210.10:FF:000003+57-194+Speckle-type_POZ_protein-like_a	PTHR24413+93-214+

SEQUENCE	Protein Sequence
	—

STRUCTURE	Disorder	(regions)	Ordered	(regions)	PDB	(hit type)
	regions	295-598	1.000	1-294	2cr2_A	PARTIAL_DOMAIN

BIOPHYSICS	Inclusion Body	Mol weight	pI	Net Charge	Charged	Aromatic	Polar	Non-polar	Basic	Acidic	Small
	0.773	66260.530	7.262	7.000	17.391	12.375	45.485	54.515	10.033	7.358	49.666

EXPRESSION	Bin13	Bin38	Average	Egg	ppJ2	pJ2	J3	J4	Female	Male	Gland (J2)	Gland (J3)	Gland (J2+J3)
	grey60	grey	572.085	41.420	69.552	99.594	279.636	157.723	486.630	74.309	138.190	1945.904	1171.170

DGE	Egg vs ppJ2	Egg vs pJ2	ppJ2 vs pJ2	pJ2 vs J3	J3 vs J4	J4 vs F	J4 vs M	F vs M	G(J3 vs J2)	G(J2) vs pJ2	G(J3) vs J3	G(J2) lines	G(J3) lines
	0.514	1.129	0.629	1.458	-0.812	1.637	-1.193	2.856	—	—	—	—	—

No JSON data available for plots.

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