SCN Proteipedia

Hg_chrom6_TN10mRNA_12597

Organism: Heterodera glycines Gene Locus: chr6:7500585-7503119 Feature type: polypeptide

Protein Sequence

Length: 345

Skip signal peptide

COMPOSITION	Ala	Asn	Asp	Cys	Glu	Gln	Gly	His	Ile	Leu	Lys	Met	Phe	Pro	Arg	Ser	Thr	Val	Trp	Tyr	Xaa
ABUNDANCE	0.573	1.281	1.212	0.3	1.014	1.338	0.656	0.435	1.031	1.214	0.922	1.194	1.932	0.892	1.301	1.118	0.855	1.054	1.561	0.767	0.0

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Features

GENOMICS	Gene Name	Nested Gene	(host gene)	Average	TN7	TN8	TN10	TN20	TN22	MM26	OP50	PA3	X12
	Hg_chrom6_TN10gene_11864	—	—	1.111	1.000	1.000	1.000	1.000	1.000	1.000	2.000	1.000	1.000

EFFECTORS	SCN putative	SCN known (N)	SCN known (P)	BCN known	BCN putative	Effector Islands	Cluster Name	(score)
	—	—	—	—	—	—	24-J3_Female	0.999

SECRETION	Secretion	DL-signals	DL-localization	Localizer	L-nucleus	L-mitochondria	(score)	L-chloroplast	(score)	Signal Peptide	(score_v5)	(score_v6)	(TM_v5)	(TM_v6)	nucleus	mitochondrion	plastid	cytoplasm	endoplasmic_reticulum	lysosome_vacuole	golgi_apparatus	peroxisome	peroxisome	extracellular
	not_secreted	nuclear_localization_signal	cytoplasm\|nucleus	—	KKRK,KRKL,KRQK	40-72	0.840	—	—	—	—	0.000	—	—	0.659	0.133	0.049	0.546	0.137	0.254	0.094	0.017	0.223	0.089

HOMOLOGY	Orthogroup	(SCN counts)	(BCN counts)	(BCN genes)	BCN hits	C. elegans hits	SP best hit	NR best hit	HGT Donor	HGT Index
	OG0001368	5.000	0.000	0.000	—	—	Q6P8B3.1 Speckle-type POZ protein [Xenopus tropicalis]	KAI1731786.1 BTB/POZ domain-containing protein [Ditylenchus destructor]	No	0.000

FUNCTIONAL	TF	GO terms	DeepGoPlus	InterPro	SMART	Pfam	FunFam	Panther
	—	GO:0005515	GO:0008150_0.938\|GO:0003674_0.856\|GO:0005575_0.814\|GO:0008152_0.806\|GO:0044238_0.786\|GO:0005488_0.769\|GO:0043170_0.760\|GO:0005515_0.744\|GO:0110165_0.670\|GO:0019538_0.642\|GO:0065007_0.628\|GO:0009056_0.624\|GO:0050789_0.618\|GO:0043412_0.610\|GO:0005622_0.608\|GO:0009057_0.607\|GO:0036211_0.607\|GO:0030163_0.596\|GO:0043687_0.594\|GO:0016567_0.593\|GO:0032446_0.593\|GO:0070647_0.593\|GO:0042802_0.591\|GO:0016020_0.572\|GO:0006508_0.550\|GO:0043226_0.549\|GO:0051603_0.545\|GO:0010498_0.543\|GO:0043632_0.543\|GO:0006511_0.539\|GO:0019941_0.539\|GO:0043161_0.539\|GO:0043229_0.536\|GO:0032991_0.525\|GO:0009987_0.513	IPR002083+59-189_61-170_62-189+\|IPR008974+57-193+\|IPR048386+236-338+\|IPR050804+55-231+	SM00061+61-170+	PF21539+236-338+ARC105/Med15_mediator_subunit_C-terminal_domain\|PF22486+62-189+MATH_domain	G3DSA:2.60.210.10:FF:000003+57-194+Speckle-type_POZ_protein-like_a	PTHR46236+55-231+

SEQUENCE	Protein Sequence
	—

STRUCTURE	Disorder	(regions)	Ordered	(regions)	PDB	(hit type)
	—	—	1.000	1-345	8dwu_I	PARTIAL_DOMAIN

BIOPHYSICS	Inclusion Body	Mol weight	pI	Net Charge	Charged	Aromatic	Polar	Non-polar	Basic	Acidic	Small
	0.718	39636.960	6.728	0.500	26.087	12.464	49.855	50.145	13.333	12.754	48.116

EXPRESSION	Bin13	Bin38	Average	Egg	ppJ2	pJ2	J3	J4	Female	Male	Gland (J2)	Gland (J3)	Gland (J2+J3)
	grey60	brown	7.031	3.981	3.784	13.509	19.039	9.433	27.051	5.236	0.000	0.000	0.000

DGE	Egg vs ppJ2	Egg vs pJ2	ppJ2 vs pJ2	pJ2 vs J3	J3 vs J4	J4 vs F	J4 vs M	F vs M	G(J3 vs J2)	G(J2) vs pJ2	G(J3) vs J3	G(J2) lines	G(J3) lines
	—	1.625	1.936	—	-0.999	1.526	—	2.509	—	4.613	—	—	—

No JSON data available for plots.

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