Hg_chrom6_TN10mRNA_12600
Organism: Heterodera glycines Gene Locus: chr6:7507276-7508658 Feature type: polypeptideProtein Sequence
Length: 139
(Signal peptide: 1-51)
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.506 | 0.335 | 0.392 | 0.992 | 0.959 | 1.845 | 0.942 | 1.079 | 0.48 | 1.944 | 0.545 | 1.693 | 1.199 | 0.968 | 1.175 | 1.85 | 0.0 | 0.763 | 0.0 | 0.423 | 0.0 |
Composition
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom6_TN10gene_11866
|
— | — |
1.111
|
1.000
|
1.000
|
2.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
7-Not_Clustered
|
0.952
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
secreted
|
signal_peptide
|
extracellular
|
nucleus
|
KRKH
|
— | — | — | — |
1-51
|
0.541
|
0.908
|
0.000
|
0.000
|
0.291
|
0.420
|
0.193
|
0.307
|
0.223
|
0.024
|
0.120
|
0.050
|
0.068
|
0.832
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0004437
|
2.000
|
1.000
|
Hsc_gene_5480.t1
|
Hsc_gene_5480.t1
|
— |
Q9XWV7.2 FMRFamide-like neuropeptides 14 [Caenorhabditis elegans]
|
AAO92291.1 FMRFamide-related peptide precursor [Heterodera glycines]
|
No
|
-0.010
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — | — | — |
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-139
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.894
|
14805.060
|
8.142
|
3.500
|
19.424
|
7.914
|
41.007
|
58.993
|
11.511
|
7.914
|
50.360
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
brown
|
brown
|
272.259
|
204.983
|
1647.700
|
385.744
|
47.283
|
67.506
|
1.417
|
768.951
|
23.073
|
2.484
|
11.308
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
2.780
|
0.774
|
-1.988
|
-3.058
|
— |
-5.562
|
3.411
|
-8.941
|
— |
4.256
|
— | — | — |