Hg_chrom6_TN10mRNA_12601
Organism: Heterodera glycines Gene Locus: chr6:7511658-7541022 Feature type: polypeptideProtein Sequence
Length: 3,188
(Signal peptide: 1-22)
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.839 | 1.211 | 1.374 | 3.093 | 1.077 | 1.086 | 0.945 | 1.192 | 0.662 | 0.797 | 0.627 | 0.498 | 0.871 | 1.255 | 1.434 | 0.977 | 0.776 | 0.789 | 0.265 | 0.692 | 0.0 |
Composition
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom6_TN10gene_11867
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
26-Not_Clustered
|
0.959
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
membrane_bound
|
signal_peptide|transmembrane_domain
|
cell_membrane
|
nucleus
|
KRRP,LGEV,RRKR,RCFKRRR
|
— | — | — | — |
1-22
|
0.999
|
1.000
|
1.000
|
1.000
|
0.184
|
0.026
|
0.011
|
0.390
|
0.126
|
0.229
|
0.160
|
0.025
|
0.849
|
0.158
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0004436
|
3.000
|
0.000
|
0.000
|
Hsc_gene_5476.t1
|
— |
P34576.2 Transmembrane cell adhesion receptor mua-3 [Caenorhabditis elegans]
|
KAI1731796.1 calcium-binding EGF domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0005509
|
GO:0005575_0.913|GO:0110165_0.913|GO:0008150_0.697|GO:0009987_0.602|GO:0071944_0.536
|
IPR000082+2328-2452_2328-2458_2504-2628_2504-2629+|IPR000152+91-102_188-199_287-298_338-349_389-400_499-510_549-560_600-611_1071-1082_1121-1132_1172-1183_1278-1289_1329-1340_1379-1390_1430-1441_1481-1492_1582-1593_1632-1643_1680-1691_1730-1741_1779-1790_1829-1840_2088-2099_2138-2149_2186-2197_2233-2244_2697-2708_2800-2811+|IPR000742+25-72_74-112_77-122_126-169_171-209_174-218_227-268_253-267_269-308_272-316_318-359_321-369_371-410_374-420_438-483_441-483_484-520_487-530_532-570_535-580_582-621_585-631_835-877_880-921_1053-1092_1056-1102_1104-1142_1107-1152_1154-1194_1157-1201_1208-1256_1261-1309_1311-1350_1314-1360_1362-1400_1365-1410_1412-1451_1415-1461_1464-1502_1467-1512_1521-1563_1564-1603_1567-1612_1614-1653_1617-1660_1624-1649_1662-1701_1665-1710_1670-1696_1712-1760_1715-1760_1762-1800_1765-1810_1812-1850_1815-1860_1861-1899_1864-1907_1911-1956_1965-2004_1968-2014_2016-2058_2019-2068_2070-2109_2073-2118_2120-2159_2123-2166_2168-2207_2171-2215_2215-2254_2218-2264_2290-2327_2631-2668_2634-2675_2679-2718_2682-2727_2727-2765_2730-2779_2783-2821_2786-2828_2828-2865_2831-2865_2853-2864+|IPR001881+22-72_74-122_173-218_224-268_269-316_318-369_371-420_442-483_488-530_533-580_584-631_1055-1102_1104-1152_1155-1201_1261-1309_1312-1360_1363-1410_1412-1461_1465-1512_1565-1612_1615-1660_1663-1710_1713-1760_1763-1810_1813-1860_1868-1907_1912-1956_2024-2068_2071-2118_2120-2166_2170-2215_2216-2264_2635-2675_2679-2727_2728-2765_2783-2828+|IPR002035+640-822_642-810_642-821+|IPR009030+164-322_488-619_1097-1262_1255-1396_1520-1666_1655-1800+|IPR013032+1166-1187+|IPR018097+74-100_2783-2809+|IPR024731+1108-1136+|IPR036465+626-821_639-825+|IPR049883+76-110_173-207_270-312_319-361_372-405_491-519_533-565_584-616_1055-1087_1260-1294_1313-1359_1363-1395_1413-1448_1465-1497_1565-1604_1713-1746_1764-1799_1813-1845_2121-2165_2170-2200_2216-2249_2783-2818+
|
SM00179+22-72_74-122_173-218_224-268_269-316_318-369_371-420_442-483_488-530_533-580_584-631_1055-1102_1104-1152_1155-1201_1261-1309_1312-1360_1363-1410_1412-1461_1465-1512_1565-1612_1615-1660_1663-1710_1713-1760_1763-1810_1813-1860_1868-1907_1912-1956_2024-2068_2071-2118_2120-2166_2170-2215_2216-2264_2635-2675_2679-2727_2728-2765_2783-2828+|SM00181+25-72_77-122_126-169_174-218_227-268_272-316_321-369_374-420_441-483_487-530_535-580_585-631_835-877_880-921_1056-1102_1107-1152_1157-1201_1208-1256_1261-1309_1314-1360_1365-1410_1415-1461_1467-1512_1521-1563_1567-1612_1617-1660_1665-1710_1715-1760_1765-1810_1815-1860_1864-1907_1911-1956_1968-2014_2019-2068_2073-2118_2123-2166_2171-2215_2218-2264_2290-2327_2634-2675_2682-2727_2730-2779_2786-2828_2831-2865+|SM00200+2328-2452_2504-2628+|SM00286+69-100_527-558_1458-1490_1609-1641_1657-1689_1707-1739_1807-1838_1885-1913_2065-2097+|SM00327+640-822+
|
PF00008+1624-1649_1670-1696+EGF-like_domain|PF00092+642-810+von_Willebrand_factor_type_A_domain|PF07645+76-110_173-207_270-312_319-361_372-405_491-519_533-565_584-616_1055-1087_1260-1294_1313-1359_1363-1395_1413-1448_1465-1497_1565-1604_1713-1746_1764-1799_1813-1845_2121-2165_2170-2200_2216-2249_2783-2818+Calcium-binding_EGF_domain|PF12661+1166-1187+Human_growth_factor-like_EGF|PF12947+1108-1136+EGF_domain
|
G3DSA:2.10.25.10:FF:000038+2779-2821+Fibrillin_2|G3DSA:2.10.25.10:FF:000291+1055-1102+Transmembrane_matrix_receptor_MUP-4|G3DSA:3.40.50.410:FF:000047+639-829+von_Willebrand_factor_A_domain_containing_2
|
PTHR24039+331-544+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
921-994;2969-3188
|
2.000
|
1-920;995-2968
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.656
|
348675.410
|
5.332
|
-53.000
|
27.572
|
8.218
|
48.588
|
51.412
|
13.551
|
14.021
|
60.194
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
purple
|
lightyellow
|
1357.822
|
2328.515
|
272.423
|
1574.184
|
2140.442
|
3587.907
|
864.236
|
990.256
|
34.484
|
1505.370
|
874.990
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-3.324
|
-0.702
|
2.639
|
0.411
|
0.761
|
-2.045
|
-1.976
|
— |
-5.571
|
5.713
|
— | — | — |