Hg_chrom6_TN10mRNA_12602
Organism: Heterodera glycines Gene Locus: chr6:7511658-7550678 Feature type: polypeptideProtein Sequence
Length: 3,860
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.889 | 1.127 | 1.361 | 2.966 | 1.054 | 1.096 | 0.944 | 1.114 | 0.639 | 0.802 | 0.62 | 0.518 | 0.907 | 1.255 | 1.502 | 1.029 | 0.828 | 0.762 | 0.339 | 0.594 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom6_TN10gene_11867
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
26-Not_Clustered
|
0.959
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
signal_peptide|transmembrane_domain
|
cell_membrane
|
— |
KKRK,KRRP,LGEV,RRKR,RCFKRRR
|
41-61
|
0.987
|
— | — | — | — |
0.000
|
— | — |
0.176
|
0.029
|
0.014
|
0.319
|
0.138
|
0.189
|
0.222
|
0.023
|
0.827
|
0.208
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0004436
|
3.000
|
0.000
|
0.000
|
Hsc_gene_5475.t1;Hsc_gene_5475.t2;Hsc_gene_5476.t1
|
— |
P34576.2 Transmembrane cell adhesion receptor mua-3 [Caenorhabditis elegans]
|
KAI1731796.1 calcium-binding EGF domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0005509|GO:0005515
|
GO:0005575_0.911|GO:0110165_0.911|GO:0008150_0.701|GO:0009987_0.615|GO:0005622_0.561|GO:0071944_0.535|GO:0043226_0.517
|
IPR000082+3000-3124_3000-3130_3176-3300_3176-3301+|IPR000152+474-485_525-536_583-594_763-774_860-871_959-970_1010-1021_1061-1072_1171-1182_1221-1232_1272-1283_1743-1754_1793-1804_1844-1855_1950-1961_2001-2012_2051-2062_2102-2113_2153-2164_2254-2265_2304-2315_2352-2363_2402-2413_2451-2462_2501-2512_2760-2771_2810-2821_2858-2869_2905-2916_3369-3380_3472-3483+|IPR000742+248-290_456-495_459-505_507-546_510-556_566-604_569-616_640-688_697-744_746-784_749-794_798-841_843-881_846-890_899-940_925-939_941-980_944-988_990-1031_993-1041_1043-1082_1046-1092_1110-1155_1113-1155_1156-1192_1159-1202_1204-1242_1207-1252_1254-1293_1257-1303_1507-1549_1552-1593_1725-1764_1728-1774_1776-1814_1779-1824_1826-1866_1829-1873_1880-1928_1933-1981_1983-2022_1986-2032_2034-2072_2037-2082_2084-2123_2087-2133_2136-2174_2139-2184_2193-2235_2236-2275_2239-2284_2286-2325_2289-2332_2296-2321_2334-2373_2337-2382_2342-2368_2384-2432_2387-2432_2434-2472_2437-2482_2484-2522_2487-2532_2533-2571_2536-2579_2583-2628_2637-2676_2640-2686_2688-2730_2691-2740_2742-2781_2745-2790_2792-2831_2795-2838_2840-2879_2843-2887_2887-2926_2890-2936_2962-2999_3303-3340_3306-3347_3351-3390_3354-3399_3399-3437_3402-3451_3455-3493_3458-3500_3500-3537_3503-3537_3525-3536+|IPR001881+456-505_508-556_566-616_694-744_746-794_845-890_896-940_941-988_990-1041_1043-1092_1114-1155_1160-1202_1205-1252_1256-1303_1727-1774_1776-1824_1827-1873_1933-1981_1984-2032_2035-2082_2084-2133_2137-2184_2237-2284_2287-2332_2335-2382_2385-2432_2435-2482_2485-2532_2540-2579_2584-2628_2696-2740_2743-2790_2792-2838_2842-2887_2888-2936_3307-3347_3351-3399_3400-3437_3455-3500+|IPR002035+1312-1494_1314-1482_1314-1493+|IPR002172+184-219_184-228+|IPR009030+836-994_1163-1291_1769-1934_1927-2068+|IPR013032+1838-1859+|IPR018097+746-772_3455-3481+|IPR024731+1780-1808+|IPR036055+178-222_181-220+|IPR036465+1298-1493_1311-1497+|IPR049883+457-490_567-597_748-782_845-879_942-984_991-1033_1044-1077_1163-1191_1205-1237_1256-1288_1727-1759_1932-1966_1985-2031_2035-2067_2137-2169_2237-2276_2385-2418_2436-2471_2485-2517_2793-2837_2842-2872_2888-2921_3455-3490+
|
SM00179+456-505_508-556_566-616_694-744_746-794_845-890_896-940_941-988_990-1041_1043-1092_1114-1155_1160-1202_1205-1252_1256-1303_1727-1774_1776-1824_1827-1873_1933-1981_1984-2032_2035-2082_2084-2133_2137-2184_2237-2284_2287-2332_2335-2382_2385-2432_2435-2482_2485-2532_2540-2579_2584-2628_2696-2740_2743-2790_2792-2838_2842-2887_2888-2936_3307-3347_3351-3399_3400-3437_3455-3500+|SM00181+248-290_459-505_510-556_569-616_640-688_697-744_749-794_798-841_846-890_899-940_944-988_993-1041_1046-1092_1113-1155_1159-1202_1207-1252_1257-1303_1507-1549_1552-1593_1728-1774_1779-1824_1829-1873_1880-1928_1933-1981_1986-2032_2037-2082_2087-2133_2139-2184_2193-2235_2239-2284_2289-2332_2337-2382_2387-2432_2437-2482_2487-2532_2536-2579_2583-2628_2640-2686_2691-2740_2745-2790_2795-2838_2843-2887_2890-2936_2962-2999_3306-3347_3354-3399_3402-3451_3458-3500_3503-3537+|SM00200+3000-3124_3176-3300+|SM00286+255-282_502-531_741-772_1199-1230_2130-2162_2281-2313_2329-2361_2379-2411_2479-2510_2557-2585_2737-2769+|SM00327+1312-1494+
|
PF00008+2296-2321_2342-2368+EGF-like_domain|PF00057+184-219+Low-density_lipoprotein_receptor_domain_class_A|PF00092+1314-1482+von_Willebrand_factor_type_A_domain|PF07645+457-490_567-597_748-782_845-879_942-984_991-1033_1044-1077_1163-1191_1205-1237_1256-1288_1727-1759_1932-1966_1985-2031_2035-2067_2137-2169_2237-2276_2385-2418_2436-2471_2485-2517_2793-2837_2842-2872_2888-2921_3455-3490+Calcium-binding_EGF_domain|PF12661+1838-1859+Human_growth_factor-like_EGF|PF12947+1780-1808+EGF_domain
|
G3DSA:2.10.25.10:FF:000038+3451-3493+Fibrillin_2|G3DSA:2.10.25.10:FF:000291+1727-1774+Transmembrane_matrix_receptor_MUP-4|G3DSA:3.40.50.410:FF:000047+1311-1501+von_Willebrand_factor_A_domain_containing_2
|
PTHR24039+2641-2976+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-99;346-449;1593-1666;3641-3860
|
3.000
|
100-345;450-1592;1667-3640
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.688
|
421333.600
|
5.562
|
-48.000
|
27.487
|
7.953
|
48.860
|
51.140
|
13.679
|
13.808
|
60.311
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
purple
|
lightyellow
|
1357.822
|
2328.515
|
272.423
|
1574.184
|
2140.442
|
3587.907
|
864.236
|
990.256
|
34.484
|
1505.370
|
874.990
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-3.324
|
-0.702
|
2.639
|
0.411
|
0.761
|
-2.045
|
-1.976
|
— |
-5.571
|
5.713
|
— | — | — |
No JSON data available for plots.