Hg_chrom6_TN10mRNA_12603
Organism: Heterodera glycines Gene Locus: chr6:7543724-7550678 Feature type: polypeptideProtein Sequence
Length: 705
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.105 | 0.693 | 1.238 | 2.25 | 0.898 | 1.164 | 0.946 | 0.78 | 0.63 | 0.882 | 0.559 | 0.751 | 1.221 | 1.255 | 1.737 | 1.277 | 1.046 | 0.645 | 0.655 | 0.167 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom6_TN10gene_11867
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
26-Not_Clustered
|
0.959
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
signal_peptide
|
extracellular
|
— |
KKRK
|
41-61
|
0.987
|
— | — | — | — |
0.000
|
— | — |
0.144
|
0.120
|
0.056
|
0.249
|
0.251
|
0.094
|
0.330
|
0.029
|
0.413
|
0.516
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0004438
|
1.000
|
2.000
|
Hsc_gene_5475.t1;Hsc_gene_5475.t2
|
Hsc_gene_5475.t1;Hsc_gene_5475.t2
|
— |
P34576.2 Transmembrane cell adhesion receptor mua-3 [Caenorhabditis elegans]
|
KAI1731798.1 calcium-binding EGF domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0005509|GO:0005515
|
GO:0005575_0.917|GO:0110165_0.917|GO:0008150_0.742|GO:0009987_0.681
|
IPR000152+474-485_525-536_583-594+|IPR000742+248-290_456-495_459-505_507-546_510-556_566-604_569-616_640-688+|IPR001881+456-505_508-556_566-616+|IPR002172+184-219_184-228+|IPR013032+519-539+|IPR036055+178-222_181-220+|IPR049883+457-490_567-597+
|
SM00179+456-505_508-556_566-616+|SM00181+248-290_459-505_510-556_569-616_640-688+
|
PF00057+184-219+Low-density_lipoprotein_receptor_domain_class_A|PF07645+457-490_567-597+Calcium-binding_EGF_domain|PF12661+519-539+Human_growth_factor-like_EGF
|
— |
PTHR24039+190-490+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-99;346-449;703-705
|
2.000
|
100-345;450-702
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.815
|
76317.630
|
7.126
|
5.500
|
25.957
|
7.376
|
48.794
|
51.206
|
13.759
|
12.199
|
59.858
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
purple
|
lightyellow
|
1357.822
|
2328.515
|
272.423
|
1574.184
|
2140.442
|
3587.907
|
864.236
|
990.256
|
34.484
|
1505.370
|
874.990
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-3.324
|
-0.702
|
2.639
|
0.411
|
0.761
|
-2.045
|
-1.976
|
— |
-5.571
|
5.713
|
— | — | — |
No JSON data available for plots.