Hg_chrom6_TN10mRNA_12604
Organism: Heterodera glycines Gene Locus: chr6:7552381-7556219 Feature type: polypeptideProtein Sequence
Length: 577
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.826 | 1.088 | 0.788 | 0.717 | 1.618 | 1.555 | 0.454 | 1.82 | 0.732 | 1.686 | 1.077 | 1.121 | 0.818 | 0.6 | 1.167 | 1.04 | 0.966 | 0.972 | 0.4 | 0.561 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom6_TN10gene_11868
|
— | — |
1.111
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
2.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
20-Egg_ppJ2_pJ2_J3_J4
|
0.974
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
nucleus
|
— |
PLAKRIR
|
— | — | — | — | — | — |
0.000
|
— | — |
0.863
|
0.036
|
0.005
|
0.408
|
0.056
|
0.029
|
0.010
|
0.012
|
0.058
|
0.038
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — | — |
KAI6180791.1 Polyhomeotic distal [Aphelenchoides besseyi]
|
No
|
-0.030
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0005515|GO:0008270
|
GO:0008150_0.947|GO:0050896_0.788|GO:0005575_0.748|GO:0110165_0.748|GO:0005622_0.721|GO:0043226_0.681|GO:0016020_0.670|GO:0043229_0.655|GO:0003674_0.642|GO:0043227_0.614|GO:0043231_0.584|GO:0005634_0.503
|
IPR000315+13-54_16-54+|IPR001660+509-574_509-576_512-561+|IPR013761+499-577_506-575+|IPR047153+7-237+
|
SM00454+509-576+
|
PF00643+16-54+B-box_zinc_finger|PF07647+509-574+SAM_domain_(Sterile_alpha_motif)
|
— |
PTHR25462+7-237+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-3;446-493
|
2.000
|
4-445;494-577
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.505
|
65494.470
|
6.779
|
3.500
|
30.503
|
9.012
|
54.419
|
45.581
|
16.464
|
14.038
|
44.714
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
grey
|
1476.360
|
2032.885
|
1423.464
|
1611.176
|
1418.262
|
1290.161
|
897.205
|
1796.836
|
912.169
|
1848.701
|
1447.331
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.743
|
-0.473
|
0.287
|
-0.216
|
— |
-0.515
|
0.376
|
-0.862
|
— | — | — | — | — |
No JSON data available for plots.