Hg_chrom6_TN10mRNA_12605
Organism: Heterodera glycines Gene Locus: chr6:7567971-7570486 Feature type: polypeptideProtein Sequence
Length: 236
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.985 | 0.887 | 0.616 | 0.877 | 1.342 | 1.195 | 0.454 | 0.636 | 0.847 | 1.317 | 1.027 | 0.748 | 0.824 | 0.815 | 0.951 | 1.755 | 1.32 | 1.091 | 1.304 | 0.374 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom6_TN10gene_11869
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
19-Eggs_Female
|
0.990
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
nucleus
|
— |
LGPSKKIWKSLEELKRK
|
87-107
|
0.941
|
82-102
|
1.000
|
— | — |
0.000
|
— | — |
0.897
|
0.090
|
0.011
|
0.406
|
0.041
|
0.026
|
0.024
|
0.015
|
0.057
|
0.059
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0010812
|
1.000
|
1.000
|
Hsc_gene_23897.t1
|
— | — | — |
CAB3260147.1 lethal(3)malignant brain tumor-like protein 4 [Phallusia mammillata]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0005515|GO:0008270
|
GO:0005575_0.933|GO:0110165_0.927|GO:0005622_0.879|GO:0016020_0.850|GO:0043226_0.839|GO:0043229_0.825|GO:0043227_0.791|GO:0043231_0.781|GO:0008150_0.703|GO:0005634_0.664|GO:0009987_0.574|GO:0003674_0.525
|
IPR000315+35-79_37-64+|IPR001660+169-236_170-234_172-236+|IPR013761+159-236_165-235+
|
SM00454+169-236+
|
PF00536+170-234+SAM_domain_(Sterile_alpha_motif)|PF00643+37-64+B-box_zinc_finger
|
— | — |
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-236
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.755
|
25944.420
|
7.149
|
1.500
|
24.153
|
7.203
|
52.966
|
47.034
|
12.712
|
11.441
|
53.814
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
darkgrey
|
grey
|
612.787
|
1027.792
|
505.733
|
625.580
|
685.205
|
679.500
|
832.329
|
757.234
|
268.717
|
561.890
|
436.244
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-1.254
|
-0.853
|
0.417
|
— | — |
0.303
|
— |
0.278
|
— | — | — | — | — |
No JSON data available for plots.