SCN Proteipedia

Hg_chrom6_TN10mRNA_12609

Organism: Heterodera glycines Gene Locus: chr6:7594121-7598502 Feature type: polypeptide

Protein Sequence

Length: 527

Skip signal peptide

COMPOSITION	Ala	Asn	Asp	Cys	Glu	Gln	Gly	His	Ile	Leu	Lys	Met	Phe	Pro	Arg	Ser	Thr	Val	Trp	Tyr	Xaa
ABUNDANCE	0.75	1.103	0.932	0.916	0.886	0.778	0.791	1.518	1.434	1.487	0.92	0.893	1.792	0.912	1.007	0.949	0.715	0.891	1.022	1.06	0.0

No JSON data available for plots.

Features

GENOMICS	Gene Name	Nested Gene	(host gene)	Average	TN7	TN8	TN10	TN20	TN22	MM26	OP50	PA3	X12
	Hg_chrom6_TN10gene_11873	—	—	1.111	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	2.000

EFFECTORS	SCN putative	SCN known (N)	SCN known (P)	BCN known	BCN putative	Effector Islands	Cluster Name	(score)
	—	—	—	—	—	—	23-Female	1.000

SECRETION	Secretion	DL-signals	DL-localization	Localizer	L-nucleus	L-mitochondria	(score)	L-chloroplast	(score)	Signal Peptide	(score_v5)	(score_v6)	(TM_v5)	(TM_v6)	nucleus	mitochondrion	plastid	cytoplasm	endoplasmic_reticulum	lysosome_vacuole	golgi_apparatus	peroxisome	peroxisome	extracellular
	not_secreted	—	endoplasmic_reticulum	—	—	—	—	—	—	—	—	0.000	—	—	0.462	0.225	0.031	0.284	0.570	0.183	0.247	0.131	0.233	0.134

HOMOLOGY	Orthogroup	(SCN counts)	(BCN counts)	(BCN genes)	BCN hits	C. elegans hits	SP best hit	NR best hit	HGT Donor	HGT Index
	OG0010815	1.000	1.000	Hsc_gene_5465.t1	—	—	—	KAI3418362.1 Ran-binding protein 10 [Globodera pallida]	No	-0.060

FUNCTIONAL	TF	GO terms	DeepGoPlus	InterPro	SMART	Pfam	FunFam	Panther
	—	GO:0005515	GO:0008150_0.949\|GO:0005575_0.914\|GO:0110165_0.914\|GO:0009987_0.885\|GO:0016020_0.857\|GO:0065007_0.799\|GO:0005622_0.797\|GO:0050896_0.794\|GO:0050789_0.780\|GO:0005737_0.775\|GO:0051179_0.771\|GO:0043226_0.770\|GO:0006810_0.769\|GO:0051234_0.769\|GO:0008152_0.766\|GO:0043229_0.766\|GO:0050794_0.766\|GO:0044238_0.750\|GO:0043227_0.746\|GO:0044237_0.745\|GO:0043231_0.742\|GO:0009058_0.738\|GO:0043170_0.729\|GO:0044249_0.721\|GO:0019538_0.716\|GO:0048519_0.712\|GO:0019222_0.700\|GO:0048523_0.700\|GO:0044281_0.697\|GO:0048583_0.697\|GO:0071705_0.697\|GO:0031323_0.694\|GO:0080090_0.691\|GO:0009056_0.690\|GO:0042592_0.690\|GO:0009889_0.686\|GO:0031326_0.685\|GO:0048878_0.685\|GO:0009057_0.682\|GO:0031667_0.682\|GO:0009892_0.681\|GO:0019725_0.681\|GO:0005975_0.678\|GO:0006508_0.678\|GO:0031324_0.678\|GO:0044283_0.678\|GO:0055082_0.678\|GO:0016051_0.677\|GO:0009890_0.676\|GO:0030163_0.676\|GO:0031327_0.676\|GO:0062012_0.674\|GO:0005996_0.670\|GO:0006006_0.670\|GO:0006094_0.670\|GO:0006109_0.670\|GO:0006111_0.670\|GO:0006511_0.670\|GO:0006808_0.670\|GO:0010498_0.670\|GO:0010906_0.670\|GO:0019318_0.670\|GO:0019319_0.670\|GO:0019740_0.670\|GO:0019941_0.670\|GO:0032107_0.670\|GO:0043161_0.670\|GO:0043255_0.670\|GO:0043632_0.670\|GO:0045721_0.670\|GO:0045912_0.670\|GO:0046364_0.670\|GO:0051603_0.670\|GO:0062014_0.670\|GO:0141067_0.670\|GO:0032991_0.612\|GO:0005634_0.568\|GO:1902494_0.555\|GO:0140535_0.545\|GO:1990234_0.545\|GO:0000151_0.540\|GO:0034657_0.540	IPR001870+1-104+\|IPR003877+11-89+\|IPR013320+11-95+\|IPR043136+7-95+\|IPR044736+11-95+	—	PF00622+11-89+SPRY_domain	—	—

SEQUENCE	Protein Sequence
	—

STRUCTURE	Disorder	(regions)	Ordered	(regions)	PDB	(hit type)
	—	—	1.000	1-527	—	—

BIOPHYSICS	Inclusion Body	Mol weight	pI	Net Charge	Charged	Aromatic	Polar	Non-polar	Basic	Acidic	Small
	0.747	59599.700	7.891	11.000	24.478	14.421	43.264	56.736	14.042	10.436	47.249

EXPRESSION	Bin13	Bin38	Average	Egg	ppJ2	pJ2	J3	J4	Female	Male	Gland (J2)	Gland (J3)	Gland (J2+J3)
	red	grey	147.608	23.533	26.416	17.631	21.379	28.550	76.332	19.233	91.007	497.626	323.361

DGE	Egg vs ppJ2	Egg vs pJ2	ppJ2 vs pJ2	pJ2 vs J3	J3 vs J4	J4 vs F	J4 vs M	F vs M	G(J3 vs J2)	G(J2) vs pJ2	G(J3) vs J3	G(J2) lines	G(J3) lines
	—	-0.553	—	—	—	1.427	—	2.127	—	—	—	—	—

No JSON data available for plots.

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