Hg_chrom6_TN10mRNA_12611
Organism: Heterodera glycines Gene Locus: chr6:7601427-7606724 Feature type: polypeptideProtein Sequence
Length: 516
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.631 | 1.622 | 1.339 | 0.802 | 1.13 | 1.441 | 0.531 | 1.453 | 1.421 | 1.1 | 1.175 | 0.912 | 1.776 | 0.634 | 0.712 | 1.274 | 0.762 | 0.793 | 0.447 | 0.513 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom6_TN10gene_11875
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
12-ppJ2_pJ2_J3_Females
|
0.961
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
cytoplasm|nucleus
|
— |
KRITELEKKQHKQNEKVKK
|
— | — |
20-61
|
0.903
|
— | — |
0.000
|
— | — |
0.606
|
0.107
|
0.029
|
0.545
|
0.288
|
0.209
|
0.119
|
0.098
|
0.102
|
0.116
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0004439
|
2.000
|
1.000
|
Hsc_gene_21714.t1
|
— | — | — |
AFD54151.1 ran-binding protein 4 [Heterodera glycines]
|
No
|
-0.030
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0005515
|
GO:0008150_0.800|GO:0005575_0.648|GO:0110165_0.648|GO:0005622_0.619|GO:0009987_0.591|GO:0016020_0.577|GO:0043226_0.571|GO:0043229_0.560|GO:0065007_0.537|GO:0050789_0.531|GO:0043227_0.529|GO:0050794_0.510|GO:0005737_0.508
|
IPR001870+189-390+|IPR003877+314-387+|IPR013320+245-390+|IPR043136+310-399_460-516+|IPR044736+285-386+
|
— |
PF00622+314-387+SPRY_domain
|
— | — |
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-106
|
1.000
|
107-516
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.545
|
58449.700
|
5.616
|
-7.500
|
28.295
|
11.628
|
54.457
|
45.543
|
14.147
|
14.147
|
48.643
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
brown
|
turquoise
|
87.635
|
29.887
|
99.552
|
29.248
|
43.997
|
44.697
|
65.866
|
31.141
|
30.853
|
231.117
|
145.290
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
1.503
|
— |
-1.654
|
0.556
|
— |
0.571
|
— |
1.229
|
— | — | — | — | — |
No JSON data available for plots.