Hg_chrom6_TN10mRNA_12613
Organism: Heterodera glycines Gene Locus: chr6:7608451-7609957 Feature type: polypeptideProtein Sequence
Length: 278
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.711 | 2.259 | 1.112 | 0.868 | 1.139 | 1.199 | 0.942 | 1.439 | 0.959 | 1.021 | 1.145 | 0.846 | 1.998 | 0.623 | 0.367 | 1.233 | 0.649 | 0.6 | 1.107 | 0.635 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom6_TN10gene_11876
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
25-Eggs_Female
|
0.988
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
cytoplasm
|
— |
KKPNLEKGGELEKEQKK
|
— | — | — | — | — | — |
0.000
|
— | — |
0.499
|
0.099
|
0.011
|
0.725
|
0.125
|
0.173
|
0.093
|
0.045
|
0.193
|
0.344
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0010817
|
1.000
|
1.000
|
Hsc_gene_5463.t1
|
— | — | — |
ACG75884.1 rbp-1 [Globodera mexicana]
|
No
|
-0.010
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0005515
|
GO:0008150_0.732|GO:0005575_0.633|GO:0110165_0.633|GO:0005622_0.570
|
IPR001870+76-270+|IPR003877+149-269_153-267+|IPR013320+100-270+|IPR043136+79-277+|IPR044736+137-266+|IPR050618+14-267+
|
SM00449+149-269+
|
PF00622+153-267+SPRY_domain
|
— |
PTHR12864+14-267+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-98
|
1.000
|
99-278
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.708
|
31022.410
|
5.173
|
-6.000
|
25.180
|
13.669
|
52.158
|
47.842
|
12.230
|
12.950
|
52.158
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
grey
|
28.020
|
166.429
|
72.227
|
17.462
|
6.186
|
14.251
|
21.270
|
3.063
|
0.000
|
9.752
|
5.573
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-1.437
|
-3.392
|
-1.939
|
-1.520
|
1.212
|
— |
-2.333
|
2.936
|
— |
4.983
|
— | — | — |
No JSON data available for plots.