Hg_chrom6_TN10mRNA_12614
Organism: Heterodera glycines Gene Locus: chr6:7611071-7613125 Feature type: polypeptideProtein Sequence
Length: 375
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.899 | 1.364 | 0.824 | 0.828 | 1.244 | 1.436 | 0.762 | 0.533 | 0.948 | 1.117 | 1.414 | 2.039 | 1.926 | 0.718 | 0.544 | 1.257 | 0.568 | 0.768 | 0.821 | 0.549 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom6_TN10gene_11877
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
23-Female
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
cytoplasm|nucleus
|
— |
KKYVSFDVFNALVERIKRL
|
— | — | — | — | — | — |
0.000
|
— | — |
0.513
|
0.061
|
0.016
|
0.595
|
0.279
|
0.128
|
0.049
|
0.019
|
0.070
|
0.175
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0000741
|
5.000
|
1.000
|
Hsc_gene_9744.t1
|
Hsc_gene_1566.t1
|
— | — |
KAI3421820.1 SPRY domain-containing protein 3 [Globodera pallida]
|
No
|
-0.010
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0005515
|
GO:0008150_0.716|GO:0005575_0.678|GO:0110165_0.676|GO:0005622_0.633|GO:0005737_0.538
|
IPR001870+158-369+|IPR003877+223-368_226-366+|IPR013320+177-369+|IPR043136+162-375+|IPR044736+209-365+|IPR050618+131-366+
|
SM00449+223-368+
|
PF00622+226-366+SPRY_domain
|
— |
PTHR12864+131-366+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
62-110
|
2.000
|
1-61;111-375
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.774
|
41914.870
|
7.170
|
2.000
|
25.067
|
10.933
|
48.800
|
51.200
|
13.067
|
12.000
|
48.000
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
red
|
grey
|
36.856
|
11.329
|
10.320
|
7.426
|
8.647
|
14.490
|
207.624
|
3.982
|
23.496
|
44.692
|
35.608
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — |
3.852
|
-1.984
|
5.843
|
— | — | — | — | — |
No JSON data available for plots.