Hg_chrom6_TN10mRNA_12617
Organism: Heterodera glycines Gene Locus: chr6:7631008-7634236 Feature type: polypeptideProtein Sequence
Length: 406
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.859 | 1.489 | 1.03 | 0.764 | 1.19 | 1.705 | 0.704 | 0.493 | 0.876 | 1.098 | 1.493 | 1.594 | 1.71 | 0.663 | 0.503 | 1.232 | 0.485 | 1.008 | 0.758 | 0.507 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom6_TN10gene_11880
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
11-Not_described
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
cytoplasm|nucleus
|
— |
KKYVSVDVFNALVERIKRL
|
— | — | — | — | — | — |
0.000
|
— | — |
0.516
|
0.059
|
0.016
|
0.636
|
0.264
|
0.153
|
0.069
|
0.016
|
0.088
|
0.231
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0000741
|
5.000
|
1.000
|
Hsc_gene_9744.t1
|
— | — |
O94712.2 Uncharacterized protein C1259.12c [Schizosaccharomyces pombe 972h-]
|
KAI3421820.1 SPRY domain-containing protein 3 [Globodera pallida]
|
KIW63768
|
0.040
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0005515
|
GO:0008150_0.743|GO:0005575_0.718|GO:0110165_0.716|GO:0005622_0.682|GO:0005737_0.585|GO:0009987_0.508
|
IPR001870+186-400+|IPR003877+251-399_255-397+|IPR013320+207-400+|IPR043136+189-406+|IPR044736+237-396+|IPR050618+131-397+
|
SM00449+251-399+
|
PF00622+255-397+SPRY_domain
|
— |
PTHR12864+131-397+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-13;62-113
|
2.000
|
14-61;114-406
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.734
|
45354.530
|
6.497
|
0.000
|
26.108
|
9.852
|
50.739
|
49.261
|
13.300
|
12.808
|
49.261
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
red
|
grey
|
98.971
|
56.436
|
23.370
|
75.224
|
81.087
|
47.180
|
267.467
|
17.139
|
1.028
|
219.261
|
125.733
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-1.499
|
— |
1.792
|
— |
-0.766
|
2.511
|
-1.562
|
4.106
|
— |
6.100
|
— | — | — |
No JSON data available for plots.