Hg_chrom6_TN10mRNA_12626
Organism: Heterodera glycines Gene Locus: chr6:7666517-7670201 Feature type: polypeptideProtein Sequence
Length: 429
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.651 | 1.138 | 1.017 | 0.804 | 0.932 | 2.271 | 0.694 | 1.282 | 1.554 | 1.103 | 1.201 | 1.92 | 1.619 | 0.448 | 0.428 | 1.132 | 1.032 | 0.636 | 0.717 | 0.823 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom6_TN10gene_11888
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
23-Female
|
0.995
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
signal_peptide
|
endoplasmic_reticulum
|
— |
KKKK
|
— | — | — | — | — | — |
0.000
|
— | — |
0.469
|
0.103
|
0.013
|
0.369
|
0.677
|
0.257
|
0.235
|
0.039
|
0.158
|
0.146
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0001372
|
1.000
|
4.000
|
Hsc_gene_5438.t1;Hsc_gene_5443.t1;Hsc_gene_5443.t2;Hsc_gene_5443.t3
|
— | — | — |
AFD54151.1 ran-binding protein 4 [Heterodera glycines]
|
KAI0179215
|
0.080
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0005515
|
GO:0008150_0.743|GO:0005575_0.597|GO:0110165_0.597|GO:0016020_0.575|GO:0005622_0.522|GO:0043226_0.511
|
IPR001870+173-373+|IPR003877+244-372_247-369+|IPR013320+185-370+|IPR043136+168-383+|IPR044736+225-368+|IPR050618+121-341+
|
SM00449+244-372+
|
PF00622+247-369+SPRY_domain
|
— |
PTHR12864+121-341+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-58;136-184
|
2.000
|
59-135;185-429
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.572
|
48600.280
|
6.565
|
0.500
|
23.776
|
12.121
|
51.748
|
48.252
|
12.587
|
11.189
|
44.988
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
darkred
|
grey
|
69.962
|
43.729
|
19.642
|
19.257
|
36.405
|
19.030
|
250.285
|
62.805
|
18.961
|
122.680
|
78.229
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-1.390
|
-1.321
|
— |
0.882
|
-0.917
|
3.725
|
1.618
|
2.132
|
— | — | — | — | — |
No JSON data available for plots.