Hg_chrom6_TN10mRNA_12627
Organism: Heterodera glycines Gene Locus: chr6:7682314-7686288 Feature type: polypeptideProtein Sequence
Length: 401
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.667 | 1.276 | 1.088 | 0.946 | 1.081 | 1.982 | 0.475 | 1.247 | 1.718 | 0.944 | 1.436 | 2.2 | 1.663 | 0.528 | 0.713 | 0.926 | 0.777 | 0.68 | 0.767 | 0.733 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom6_TN10gene_11889
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
13-Not_described
|
0.997
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
endoplasmic_reticulum
|
— |
KKKK
|
— | — | — | — | — | — |
0.000
|
— | — |
0.458
|
0.161
|
0.021
|
0.376
|
0.589
|
0.199
|
0.229
|
0.041
|
0.231
|
0.158
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0000599
|
1.000
|
6.000
|
Hsc_gene_2898.t1;Hsc_gene_2898.t2;Hsc_gene_2898.t3;Hsc_gene_5436.t1;Hsc_gene_5437.t1;Hsc_gene_5437.t2
|
— | — | — |
KAI3422673.1 BTB/POZ domain-containing protein 1 [Globodera pallida]
|
No
|
-0.020
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0005515
|
GO:0008150_0.959|GO:0009987_0.704|GO:0065007_0.641|GO:0050789_0.627|GO:0050794_0.600|GO:0005575_0.574|GO:0110165_0.574|GO:0016020_0.545|GO:0048519_0.523|GO:0008152_0.520|GO:0044238_0.519|GO:0009058_0.517|GO:0044237_0.510|GO:0044249_0.505|GO:0048523_0.504|GO:0019222_0.502
|
IPR001870+134-331+|IPR003877+204-330_206-328+|IPR013320+138-331+|IPR043136+129-341+|IPR044736+188-327+|IPR050618+103-328+
|
SM00449+204-330+
|
PF00622+206-328+SPRY_domain
|
— |
PTHR12864+103-328+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-54
|
1.000
|
55-401
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.606
|
46321.150
|
7.781
|
7.000
|
27.930
|
11.970
|
52.369
|
47.631
|
15.461
|
12.469
|
42.394
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
grey
|
1210.602
|
953.874
|
2045.101
|
319.655
|
150.672
|
264.629
|
217.596
|
1428.775
|
806.236
|
2674.091
|
1873.582
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.871
|
-1.714
|
-2.569
|
-1.117
|
0.827
|
— |
2.329
|
-2.575
|
— | — |
-3.701
|
— | — |
No JSON data available for plots.