Hg_chrom6_TN10mRNA_12628
Organism: Heterodera glycines Gene Locus: chr6:7686616-7689651 Feature type: polypeptideProtein Sequence
Length: 323
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.972 | 1.008 | 0.675 | 0.427 | 0.516 | 0.556 | 1.253 | 1.548 | 1.238 | 1.506 | 0.375 | 1.821 | 2.408 | 1.131 | 0.821 | 0.973 | 0.609 | 1.079 | 1.667 | 0.82 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom6_TN10gene_11890
|
— | — |
1.111
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
2.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
29-Not_Clustered
|
0.958
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
cell_membrane|lysosome_vacuole
|
— | — |
34-60
|
0.999
|
— | — | — | — |
0.003
|
— | — |
0.064
|
0.180
|
0.017
|
0.306
|
0.276
|
0.736
|
0.305
|
0.082
|
0.600
|
0.124
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0010819
|
1.000
|
1.000
|
Hsc_gene_5435.t1
|
Hsc_gene_2899.t1;Hsc_gene_5435.t1;Hsc_gene_5435.t2
|
— |
P47862.1 Aquaporin-3 [Rattus norvegicus]
|
KAH7723249.1 Protein AQP-7 [Aphelenchus avenae]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0015267|GO:0016020|GO:0055085
|
GO:0008150_0.889|GO:0005575_0.845|GO:0110165_0.845|GO:0009987_0.820|GO:0016020_0.783|GO:0071944_0.731|GO:0003674_0.724|GO:0006810_0.715|GO:0051179_0.715|GO:0051234_0.715|GO:0055085_0.715|GO:0005886_0.694|GO:0005215_0.576|GO:0022857_0.576|GO:0015850_0.523|GO:0015791_0.510|GO:0006833_0.505|GO:0042044_0.505
|
IPR000425+48-67_48-286_49-285_88-112_125-144_188-206_220-242_268-288+|IPR022357+106-114+|IPR023271+45-293_47-291+|IPR050363+37-302+
|
— |
PF00230+49-285+Major_intrinsic_protein
|
— |
PTHR43829+37-302+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
306-323
|
1.000
|
1-305
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.829
|
35453.090
|
7.234
|
4.000
|
16.409
|
16.718
|
33.437
|
66.563
|
9.598
|
6.811
|
51.703
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
turquoise
|
yellow
|
1579.562
|
530.718
|
825.875
|
927.949
|
1444.186
|
2803.652
|
1818.676
|
2257.004
|
684.466
|
2419.212
|
1675.749
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.410
|
0.669
|
0.276
|
0.605
|
0.972
|
-0.615
|
— | — | — | — | — | — | — |
No JSON data available for plots.