Hg_chrom6_TN10mRNA_12630
Organism: Heterodera glycines Gene Locus: chr6:7709286-7712563 Feature type: polypeptideProtein Sequence
Length: 247
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.847 | 0.565 | 0.883 | 0.279 | 1.215 | 1.453 | 0.964 | 1.417 | 0.54 | 1.149 | 0.675 | 1.905 | 1.35 | 0.623 | 1.157 | 1.446 | 1.062 | 0.92 | 0.934 | 1.31 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom6_TN10gene_11892
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
11-Not_Clustered
|
0.549
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
cytoplasm
|
— | — |
44-64
|
0.890
|
— | — | — | — |
0.000
|
— | — |
0.419
|
0.276
|
0.031
|
0.563
|
0.156
|
0.415
|
0.258
|
0.051
|
0.162
|
0.138
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0000356
|
6.000
|
2.000
|
Hsc_gene_3002.t1;Hsc_gene_3002.t2
|
Hsc_gene_9734.t1
|
— |
Q3V1L4.2 Cytosolic purine 5'-nucleotidase [Mus musculus]
|
KAH7722649.1 Protein Y71H10B.1 a [Aphelenchus avenae]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0006511|GO:0019773
|
GO:0005575_0.796|GO:0110165_0.763|GO:0008150_0.729|GO:0005622_0.712|GO:0005737_0.617|GO:0016020_0.541|GO:0043226_0.527|GO:0043229_0.513|GO:0008152_0.512|GO:0009987_0.510|GO:0044238_0.510
|
IPR000426+6-28+|IPR008380+35-195+|IPR023214+8-113+|IPR029055+2-41+|IPR036412+31-196+
|
SM00948+6-28+
|
PF05761+35-195+5'_nucleotidase_family|PF10584+6-28+Proteasome_subunit_A_N-terminal_signature
|
— |
PTHR12103+35-195+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
198-247
|
1.000
|
1-197
|
6fiw_A
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.619
|
27667.970
|
6.154
|
-1.500
|
25.101
|
13.360
|
49.798
|
50.202
|
12.955
|
12.146
|
49.393
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
skyblue
|
grey
|
670.088
|
384.643
|
253.745
|
292.045
|
432.858
|
403.901
|
383.823
|
334.695
|
334.074
|
1748.936
|
1142.567
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.831
|
-0.534
|
0.312
|
0.536
|
— | — |
-0.373
|
0.340
|
— | — | — | — | — |
No JSON data available for plots.