Hg_chrom6_TN10mRNA_12631
Organism: Heterodera glycines Gene Locus: chr6:7713911-7717535 Feature type: polypeptideProtein Sequence
Length: 544
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.791 | 1.71 | 1.103 | 0.697 | 1.011 | 1.791 | 0.919 | 0.827 | 1.348 | 0.944 | 0.78 | 0.973 | 2.247 | 0.813 | 0.788 | 1.024 | 0.633 | 0.808 | 0.848 | 0.541 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom6_TN10gene_11893
|
— | — |
1.222
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
2.000
|
2.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
12-ppJ2_pJ2_J3_Females
|
0.968
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
cytoplasm
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.494
|
0.091
|
0.014
|
0.597
|
0.238
|
0.165
|
0.055
|
0.051
|
0.143
|
0.089
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0004440
|
1.000
|
2.000
|
Hsc_gene_5420.t1;Hsc_gene_5420.t2
|
Hsc_gene_3846.t1;Hsc_gene_5420.t1;Hsc_gene_5420.t2;Hsc_gene_5422.t1
|
— | — |
KAI3417080.1 BTB/POZ domain-containing protein 3 [Globodera pallida]
|
KAH6904514
|
0.020
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0005515
|
GO:0008150_0.776|GO:0005575_0.657|GO:0110165_0.651|GO:0005622_0.575|GO:0009987_0.534|GO:0005737_0.530
|
IPR001870+167-358+|IPR003877+235-357_238-355_410-535_413-532+|IPR013320+180-358_369-536+|IPR043136+171-366_367-543+|IPR044736+222-354_411-532+|IPR050618+64-355+
|
SM00449+235-357_410-535+
|
PF00622+238-355_413-532+SPRY_domain
|
— |
PTHR12864+64-355+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-87
|
1.000
|
88-544
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.637
|
60841.220
|
4.859
|
-12.500
|
22.794
|
12.684
|
48.162
|
51.838
|
10.662
|
12.132
|
50.551
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
darkgrey
|
grey
|
86.612
|
124.987
|
144.863
|
73.034
|
65.281
|
57.420
|
439.794
|
28.715
|
8.223
|
22.474
|
16.367
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — |
-0.913
|
-0.877
|
— | — |
2.945
|
-1.106
|
4.078
|
— | — | — | — | — |
No JSON data available for plots.