Hg_chrom6_TN10mRNA_12632
Organism: Heterodera glycines Gene Locus: chr6:7721115-7725116 Feature type: polypeptideProtein Sequence
Length: 379
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.583 | 1.534 | 1.103 | 0.273 | 1.627 | 1.691 | 0.534 | 1.187 | 1.231 | 1.212 | 1.679 | 2.173 | 1.832 | 0.355 | 0.377 | 0.98 | 0.779 | 0.44 | 0.609 | 1.009 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom6_TN10gene_11894
|
— | — |
1.333
|
2.000
|
1.000
|
1.000
|
1.000
|
2.000
|
1.000
|
1.000
|
1.000
|
2.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
19-Not_Clustered
|
0.940
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
cytoplasm
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.432
|
0.048
|
0.007
|
0.643
|
0.395
|
0.264
|
0.079
|
0.018
|
0.143
|
0.326
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0000365
|
7.000
|
1.000
|
Hsc_gene_3843.t1
|
— | — |
P18160.3 Dual specificity protein kinase splA [Dictyostelium discoideum]
|
AFD54151.1 ran-binding protein 4 [Heterodera glycines]
|
No
|
-0.190
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0005515
|
GO:0005575_0.770|GO:0110165_0.768|GO:0005622_0.757|GO:0008150_0.755|GO:0005737_0.661|GO:0009987_0.581|GO:0043226_0.574|GO:0016020_0.562|GO:0043229_0.557|GO:0043227_0.521|GO:0065007_0.506
|
IPR001870+178-373+|IPR003877+243-372_246-369+|IPR013320+189-373+|IPR043136+171-379+|IPR044736+228-369+|IPR050618+91-371+
|
SM00449+243-372+
|
PF00622+246-369+SPRY_domain
|
— |
PTHR12864+91-371+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-26;78-149
|
2.000
|
27-77;150-379
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.598
|
44112.890
|
5.373
|
-6.500
|
31.135
|
13.193
|
55.937
|
44.063
|
15.303
|
15.831
|
39.314
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
darkgrey
|
grey
|
31.387
|
64.165
|
33.323
|
18.562
|
9.709
|
18.833
|
101.525
|
11.957
|
1.896
|
39.119
|
23.166
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-1.182
|
-1.926
|
-0.729
|
-0.966
|
0.969
|
2.436
|
— |
3.223
|
-4.502
|
3.583
|
— | — | — |
No JSON data available for plots.