Hg_chrom6_TN10mRNA_12633
Organism: Heterodera glycines Gene Locus: chr6:7725725-7727411 Feature type: polypeptideProtein Sequence
Length: 100
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.814 | 0.465 | 0.364 | 0.345 | 0.167 | 1.795 | 0.476 | 1.0 | 1.778 | 2.568 | 0.909 | 2.941 | 1.944 | 0.577 | 0.816 | 1.0 | 0.82 | 0.909 | 2.308 | 0.294 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom6_TN10gene_11895
|
— | — |
1.778
|
2.000
|
2.000
|
1.000
|
1.000
|
2.000
|
4.000
|
1.000
|
1.000
|
2.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
10-Pre_planta
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
signal_peptide
|
cell_membrane
|
— | — |
3-44
|
0.992
|
— | — | — | — |
0.000
|
— | — |
0.059
|
0.207
|
0.009
|
0.170
|
0.275
|
0.238
|
0.434
|
0.114
|
0.456
|
0.181
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0010820
|
1.000
|
1.000
|
Hsc_gene_9948.t1
|
Hsc_gene_9947.t1;Hsc_gene_9948.t1
|
— | — |
KAI3413232.1 Kunitz-type protease inhibitor 1 [Globodera pallida]
|
KAJ8905884
|
0.070
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — | — | — |
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-100
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.603
|
11463.940
|
11.084
|
8.000
|
15.000
|
13.000
|
36.000
|
64.000
|
12.000
|
3.000
|
37.000
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
grey
|
69.215
|
209.048
|
146.315
|
30.884
|
24.444
|
25.074
|
23.279
|
60.636
|
1.382
|
106.897
|
61.676
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.747
|
-2.896
|
-2.134
|
— | — | — |
1.169
|
-1.245
|
-6.497
|
4.811
|
— | — | — |
No JSON data available for plots.