Hg_chrom6_TN10mRNA_12635
Organism: Heterodera glycines Gene Locus: chr6:7743430-7747513 Feature type: polypeptideProtein Sequence
Length: 408
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.342 | 1.653 | 0.98 | 0.423 | 2.778 | 2.137 | 0.321 | 0.98 | 1.035 | 1.06 | 2.525 | 1.009 | 1.77 | 0.33 | 0.3 | 0.63 | 0.442 | 0.631 | 0.189 | 0.505 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom6_TN10gene_11897
|
— | — |
1.111
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
2.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — | — | — |
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
cytoplasm
|
— |
KAKLDKKEKKLDKKEEQLEKKEQKLEKKEEQLEKKEVKLEKKEEQLEKKEEQLEKKEVKLEKKEEQLEKKEVKLETKEVKLEKKE
|
— | — | — | — | — | — |
0.000
|
— | — |
0.482
|
0.064
|
0.007
|
0.592
|
0.449
|
0.158
|
0.078
|
0.018
|
0.145
|
0.323
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0000365
|
7.000
|
1.000
|
Hsc_gene_3843.t1
|
Hsc_gene_3843.t1;Hsc_gene_3843.t2
|
— |
P18160.3 Dual specificity protein kinase splA [Dictyostelium discoideum]
|
AFD54151.1 ran-binding protein 4 [Heterodera glycines]
|
MCM1184019
|
0.090
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0005515
|
GO:0008150_0.952|GO:0005575_0.693|GO:0110165_0.693|GO:0005622_0.691|GO:0043226_0.672|GO:0043229_0.656|GO:0016020_0.630|GO:0043227_0.606|GO:0009987_0.594|GO:0005737_0.593|GO:0032991_0.568|GO:0043231_0.553|GO:0065007_0.553|GO:0050789_0.540|GO:0051179_0.528|GO:0050794_0.518|GO:0005634_0.503|GO:0051234_0.501
|
IPR001870+206-402+|IPR003877+272-401_275-398+|IPR013320+222-383+|IPR043136+211-408+|IPR044736+259-398+
|
SM00449+272-401+
|
PF00622+275-398+SPRY_domain
|
— | — |
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-205
|
1.000
|
206-408
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.786
|
48630.720
|
5.054
|
-12.000
|
42.157
|
10.294
|
64.706
|
35.294
|
20.098
|
22.059
|
32.353
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — |
blue
|
33.016
|
1.784
|
4.724
|
1.800
|
1.167
|
1.382
|
7.595
|
1.380
|
2.924
|
134.816
|
78.291
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — |
2.463
|
— |
2.600
|
-5.637
|
— |
-6.621
|
— | — |
No JSON data available for plots.