Hg_chrom6_TN10mRNA_12636
Organism: Heterodera glycines Gene Locus: chr6:7769739-7773327 Feature type: polypeptideProtein Sequence
Length: 472
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.542 | 1.724 | 0.693 | 0.438 | 2.083 | 2.119 | 0.58 | 0.847 | 0.942 | 1.174 | 2.151 | 2.368 | 1.648 | 0.244 | 0.562 | 0.726 | 0.59 | 0.482 | 0.489 | 0.561 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom6_TN10gene_11898
|
— | — |
1.222
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
2.000
|
2.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
3-Not_described
|
0.992
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
cytoplasm
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.499
|
0.050
|
0.010
|
0.642
|
0.370
|
0.198
|
0.116
|
0.015
|
0.144
|
0.277
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0000365
|
7.000
|
1.000
|
Hsc_gene_3843.t1
|
— | — |
F4HYD7.1 Ran-binding protein M homolog [Arabidopsis thaliana]
|
AFD54151.1 ran-binding protein 4 [Heterodera glycines]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0005515
|
GO:0005575_0.774|GO:0110165_0.769|GO:0005622_0.762|GO:0008150_0.748|GO:0005737_0.656|GO:0043226_0.591|GO:0009987_0.573|GO:0043229_0.573|GO:0016020_0.566|GO:0043227_0.522|GO:0065007_0.510
|
IPR001870+253-466+|IPR003877+333-465_336-463+|IPR013320+269-466+|IPR043136+259-472+|IPR044736+318-462+
|
SM00449+333-465+
|
PF00622+336-463+SPRY_domain
|
— | — |
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-7;63-280
|
2.000
|
8-62;281-472
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.614
|
55330.050
|
8.210
|
7.000
|
34.958
|
10.169
|
59.322
|
40.678
|
18.644
|
16.314
|
35.169
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
brown
|
brown
|
13.027
|
15.053
|
45.265
|
13.297
|
5.345
|
8.794
|
14.911
|
36.268
|
6.522
|
0.000
|
2.795
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
1.361
|
— |
-1.660
|
-1.344
|
— | — |
1.937
|
-1.139
|
— | — | — | — | — |
No JSON data available for plots.