Hg_chrom6_TN10mRNA_12639
Organism: Heterodera glycines Gene Locus: chr6:7798081-7803056 Feature type: polypeptideProtein Sequence
Length: 538
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.584 | 1.081 | 0.845 | 0.256 | 1.27 | 1.096 | 0.797 | 1.022 | 0.867 | 0.728 | 1.014 | 1.968 | 0.981 | 1.644 | 2.2 | 1.699 | 0.518 | 0.789 | 0.143 | 0.492 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom6_TN10gene_11901
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
28-Egg
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
nucleus
|
— |
RRVVKFLRSLNNGRRRRRA,PRVLSPSPPPLKKSKKEKRKKEKRQRRSKH
|
— | — | — | — | — | — |
0.000
|
— | — |
0.929
|
0.044
|
0.002
|
0.203
|
0.026
|
0.016
|
0.043
|
0.002
|
0.056
|
0.045
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0001371
|
3.000
|
2.000
|
Hsc_gene_5445.t1;Hsc_gene_5445.t2
|
Hsc_gene_1547.t1;Hsc_gene_1713.t1;Hsc_gene_17892.t1;Hsc_gene_5445.t1;Hsc_gene_5445.t2
|
— | — |
KAH7727910.1 Protein Y57G11C.9 a [Aphelenchus avenae]
|
No
|
0.070
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0003676|GO:0003723
|
— |
IPR000504+19-97_20-93_21-79+|IPR012677+3-100+|IPR035979+8-95+
|
SM00360+20-93+
|
PF00076+21-79+RNA_recognition_motif
|
— | — |
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-6;110-538
|
1.000
|
7-109
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.942
|
60561.270
|
10.661
|
33.500
|
31.784
|
7.435
|
55.762
|
44.238
|
19.517
|
12.268
|
50.558
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
grey60
|
1145.251
|
2563.943
|
1352.370
|
1454.801
|
1395.082
|
1411.894
|
1205.951
|
1315.583
|
442.204
|
666.461
|
570.351
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-1.152
|
-0.955
|
0.213
|
— | — |
-0.218
|
-0.207
|
— | — | — | — | — | — |
No JSON data available for plots.