Hg_chrom6_TN10mRNA_12651
Organism: Heterodera glycines Gene Locus: chr6:7877898-7879342 Feature type: polypeptideProtein Sequence
Length: 272
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.855 | 1.539 | 0.802 | 1.141 | 0.613 | 0.848 | 0.788 | 0.184 | 1.225 | 0.795 | 1.393 | 2.163 | 1.94 | 0.919 | 1.125 | 1.313 | 0.663 | 0.836 | 1.98 | 0.433 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom6_TN10gene_11913
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
23-Female
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
nucleus
|
— |
KRRAKRQRKSSRRKVL,KKICRSKTKRRAKRQRKS,KICRSKTKRRAKRQRKSSRRK
|
15-36
|
0.994
|
— | — | — | — |
0.000
|
— | — |
0.841
|
0.099
|
0.087
|
0.397
|
0.047
|
0.052
|
0.071
|
0.039
|
0.034
|
0.204
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0000741
|
5.000
|
1.000
|
Hsc_gene_9744.t1
|
Hsc_gene_1566.t1;Hsc_gene_26432.t1;Hsc_gene_5432.t1;Hsc_gene_5432.t2;Hsc_gene_9742.t1;Hsc_gene_9742.t2
|
— |
O94712.2 Uncharacterized protein C1259.12c [Schizosaccharomyces pombe 972h-]
|
AFD54151.1 ran-binding protein 4 [Heterodera glycines]
|
No
|
-0.030
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0005515
|
GO:0008150_0.701|GO:0005575_0.641|GO:0110165_0.641|GO:0005622_0.570
|
IPR001870+55-266+|IPR003877+120-265_123-263+|IPR013320+73-266+|IPR043136+58-272+|IPR044736+106-262+|IPR050618+26-263+
|
SM00449+120-265+
|
PF00622+123-263+SPRY_domain
|
— |
PTHR12864+26-263+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-31
|
1.000
|
32-272
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.806
|
30569.380
|
10.268
|
18.500
|
23.162
|
11.397
|
46.324
|
53.676
|
15.074
|
8.088
|
51.838
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
red
|
grey
|
39.046
|
1.613
|
1.024
|
1.258
|
0.950
|
1.137
|
33.235
|
0.687
|
0.000
|
155.862
|
89.064
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — |
4.887
|
— |
5.734
|
— | — | — | — | — |
No JSON data available for plots.