Hg_chrom6_TN10mRNA_12652
Organism: Heterodera glycines Gene Locus: chr6:7901467-7904576 Feature type: polypeptideProtein Sequence
Length: 472
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.493 | 1.724 | 0.732 | 0.438 | 2.083 | 2.064 | 0.555 | 0.742 | 0.989 | 1.088 | 2.119 | 2.493 | 1.766 | 0.285 | 0.605 | 0.787 | 0.556 | 0.514 | 0.489 | 0.561 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom6_TN10gene_11914
|
— | — |
1.222
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
2.000
|
2.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — | — | — |
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
cytoplasm|nucleus
|
— |
KRQK
|
— | — | — | — | — | — |
0.000
|
— | — |
0.502
|
0.049
|
0.010
|
0.641
|
0.367
|
0.204
|
0.114
|
0.015
|
0.141
|
0.269
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0000365
|
7.000
|
1.000
|
Hsc_gene_3843.t1
|
— | — |
F4HYD7.1 Ran-binding protein M homolog [Arabidopsis thaliana]
|
AFD54151.1 ran-binding protein 4 [Heterodera glycines]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0005515
|
GO:0008150_0.776|GO:0005575_0.736|GO:0110165_0.732|GO:0005622_0.725|GO:0043226_0.639|GO:0005737_0.622|GO:0043229_0.621|GO:0016020_0.612|GO:0043227_0.573|GO:0009987_0.567|GO:0043231_0.535|GO:0065007_0.504
|
IPR001870+253-466+|IPR003877+333-465_336-463+|IPR013320+269-466+|IPR043136+259-472+|IPR044736+318-462+
|
SM00449+333-465+
|
PF00622+336-463+SPRY_domain
|
— | — |
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-7;63-280
|
2.000
|
8-62;281-472
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.615
|
55477.200
|
7.960
|
5.500
|
34.958
|
10.381
|
59.322
|
40.678
|
18.432
|
16.525
|
35.381
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — |
grey
|
4.665
|
2.289
|
4.248
|
1.440
|
0.489
|
0.257
|
5.470
|
7.327
|
3.438
|
9.760
|
7.050
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — | — |
-1.446
|
— | — |
4.447
|
4.750
|
— | — | — | — | — | — |
No JSON data available for plots.