Hg_chrom6_TN10mRNA_12653
Organism: Heterodera glycines Gene Locus: chr6:7915548-7917267 Feature type: polypeptideProtein Sequence
Length: 170
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.616 | 1.094 | 0.963 | 0.406 | 0.784 | 0.603 | 0.7 | 0.882 | 1.307 | 1.431 | 1.07 | 1.73 | 2.124 | 1.244 | 1.2 | 0.252 | 1.35 | 0.891 | 1.81 | 1.211 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom6_TN10gene_11915
|
— | — |
1.333
|
— |
1.000
|
2.000
|
2.000
|
2.000
|
2.000
|
2.000
|
— |
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — | — | — |
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
cytoplasm
|
— |
RPRR,RRTATVVVMHHRSNGKKPR
|
— | — | — | — | — | — |
0.000
|
— | — |
0.332
|
0.568
|
0.009
|
0.699
|
0.362
|
0.032
|
0.128
|
0.055
|
0.017
|
0.423
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0010822
|
1.000
|
1.000
|
Hsc_gene_5471.t1
|
— | — |
Q54XC1.1 Cytosolic purine 5'-nucleotidase [Dictyostelium discoideum]
|
KAI1722653.1 5' nucleotidase family domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0005575_0.745|GO:0008150_0.690|GO:0110165_0.678|GO:0003674_0.649|GO:0009987_0.623|GO:0005622_0.599|GO:0005737_0.584|GO:0008152_0.570|GO:0003824_0.556|GO:0044237_0.545|GO:0044238_0.542
|
IPR008380+9-93_10-93+|IPR036412+9-94+
|
— |
PF05761+10-93+5'_nucleotidase_family
|
— |
PTHR12103+9-93+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-170
|
6fxh_A
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.764
|
19801.110
|
9.547
|
6.500
|
24.706
|
15.882
|
41.765
|
58.235
|
14.706
|
10.000
|
44.706
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — |
brown
|
1.641
|
3.845
|
4.313
|
2.732
|
1.419
|
1.505
|
1.726
|
3.599
|
0.000
|
0.000
|
0.000
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — | — | — | — | — | — | — | — |
No JSON data available for plots.