Hg_chrom6_TN10mRNA_12656
Organism: Heterodera glycines Gene Locus: chr6:7943266-7945890 Feature type: polypeptideProtein Sequence
Length: 252
(Signal peptide: 1-22)
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.154 | 1.292 | 0.866 | 2.326 | 0.463 | 1.221 | 0.52 | 0.992 | 0.353 | 1.073 | 0.12 | 1.634 | 1.543 | 1.526 | 1.62 | 1.417 | 0.651 | 0.962 | 2.442 | 0.35 | 0.0 |
Composition
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom6_TN10gene_11918
|
— | — |
1.222
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
2.000
|
1.000
|
1.000
|
2.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
1-J4_Female
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
secreted
|
— |
extracellular
|
chloroplast
|
— |
45-71
|
0.953
|
65-110
|
0.946
|
1-22
|
0.992
|
1.000
|
0.000
|
0.000
|
0.157
|
0.204
|
0.053
|
0.273
|
0.215
|
0.399
|
0.154
|
0.049
|
0.317
|
0.752
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0010825
|
1.000
|
1.000
|
Hsc_gene_5409.t1
|
Hsc_gene_5409.t1
|
— |
Q10008.2 Uncharacterized protein T19C3.2 [Caenorhabditis elegans]
|
CAD2169750.1 unnamed protein product [Meloidogyne enterolobii]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — | — |
IPR040271+11-224+
|
— | — | — |
PTHR37443+11-224+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-252
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.893
|
28051.950
|
7.758
|
5.500
|
18.254
|
11.905
|
42.460
|
57.540
|
10.714
|
7.540
|
59.524
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
orange
|
turquoise
|
38.196
|
16.061
|
14.408
|
15.987
|
19.872
|
54.798
|
57.807
|
18.791
|
1.382
|
91.924
|
53.120
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — | — | — | — |
1.482
|
— |
-1.651
|
1.765
|
-6.209
|
3.858
|
— | — | — |