Hg_chrom6_TN10mRNA_12658
Organism: Heterodera glycines Gene Locus: chr6:7963281-7966266 Feature type: polypeptideProtein Sequence
Length: 357
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.521 | 1.629 | 1.12 | 0.483 | 1.587 | 1.939 | 0.567 | 0.56 | 1.618 | 0.908 | 1.613 | 1.648 | 1.867 | 0.323 | 0.686 | 0.84 | 0.643 | 0.594 | 1.077 | 1.071 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom6_TN10gene_11920
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
2-Not_Clustered
|
0.748
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
cytoplasm
|
— |
KKISQLKKEPKQRKA,RKILLKKISQLKKEPKQRK
|
— | — | — | — | — | — |
0.000
|
— | — |
0.418
|
0.076
|
0.004
|
0.596
|
0.267
|
0.263
|
0.115
|
0.014
|
0.112
|
0.289
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0000902
|
1.000
|
5.000
|
Hsc_gene_17896.t1;Hsc_gene_21720.t1;Hsc_gene_22906.t1;Hsc_gene_5403.t1;Hsc_gene_5404.t1
|
— | — | — |
AFD54151.1 ran-binding protein 4 [Heterodera glycines]
|
No
|
-0.020
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0005515
|
GO:0008150_0.944|GO:0009987_0.617|GO:0065007_0.520|GO:0050789_0.510
|
IPR001870+151-346+|IPR003877+218-345_221-341+|IPR013320+164-342+|IPR043136+146-357+|IPR044736+203-341+
|
SM00449+218-345+
|
PF00622+221-341+SPRY_domain
|
— | — |
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-79
|
1.000
|
80-357
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.524
|
41937.440
|
5.401
|
-4.000
|
30.812
|
12.885
|
55.182
|
44.818
|
15.126
|
15.686
|
39.216
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
grey60
|
turquoise
|
153.716
|
22.421
|
103.805
|
87.934
|
136.456
|
107.319
|
134.507
|
30.723
|
24.843
|
420.187
|
250.754
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
1.977
|
1.835
|
— |
0.602
|
-0.332
|
— |
-1.913
|
2.268
|
-4.204
|
— | — | — | — |
No JSON data available for plots.