Hg_chrom6_TN10mRNA_12659
Organism: Heterodera glycines Gene Locus: chr6:7967499-7971069 Feature type: polypeptideProtein Sequence
Length: 442
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.0 | 1.263 | 1.111 | 0.702 | 1.131 | 1.16 | 0.727 | 1.131 | 1.307 | 1.345 | 0.994 | 2.529 | 1.445 | 0.914 | 0.923 | 0.808 | 0.593 | 0.686 | 0.87 | 0.599 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom6_TN10gene_11921
|
— | — |
1.111
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
2.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
7-ppJ2
|
0.990
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
cell_membrane
|
— |
RKKHKDGEWLKKDKKLQK
|
— | — | — | — | — | — |
0.000
|
— | — |
0.240
|
0.142
|
0.020
|
0.252
|
0.149
|
0.445
|
0.268
|
0.006
|
0.806
|
0.271
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0010827
|
1.000
|
1.000
|
Hsc_gene_5407.t1
|
Hsc_gene_5407.t1
|
— | — |
KAI3419993.1 plasma membrane localization protein [Globodera pallida]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0008150_0.955|GO:0005575_0.910|GO:0110165_0.910|GO:0009987_0.904|GO:0051179_0.786|GO:0051641_0.718|GO:0065007_0.644|GO:0016020_0.626|GO:0050789_0.625|GO:0051234_0.573|GO:0006810_0.572|GO:0071840_0.565|GO:0016043_0.561|GO:0007154_0.540|GO:0023052_0.538|GO:0005886_0.537|GO:0071944_0.537|GO:0006996_0.515|GO:0051649_0.508
|
IPR049152+55-154+|IPR051851+42-409+
|
— |
PF21052+55-154+EFR3,_armadillo_repeat
|
— |
PTHR12444+42-409+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
416-442
|
1.000
|
1-415
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.561
|
49697.100
|
6.022
|
-3.000
|
26.244
|
10.633
|
45.475
|
54.525
|
13.348
|
12.896
|
46.833
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
magenta
|
41.020
|
69.353
|
119.720
|
63.964
|
23.419
|
12.491
|
46.875
|
35.396
|
6.681
|
35.247
|
23.005
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.560
|
— |
-0.796
|
-1.483
|
-0.891
|
1.917
|
1.401
|
— | — | — | — | — | — |
No JSON data available for plots.