Hg_chrom6_TN10mRNA_12661
Organism: Heterodera glycines Gene Locus: chr6:7980171-7982833 Feature type: polypeptideProtein Sequence
Length: 416
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.699 | 1.957 | 0.962 | 0.249 | 1.643 | 1.911 | 0.63 | 1.322 | 1.549 | 1.104 | 1.785 | 0.99 | 1.736 | 0.231 | 0.392 | 1.065 | 0.473 | 0.51 | 0.74 | 0.495 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom6_TN10gene_11923
|
— | — |
1.111
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
2.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
2-Not_Clustered
|
0.918
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
cytoplasm
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.466
|
0.066
|
0.008
|
0.678
|
0.203
|
0.199
|
0.099
|
0.025
|
0.130
|
0.292
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0004443
|
1.000
|
2.000
|
Hsc_gene_17894.t1;Hsc_gene_17894.t2
|
— | — | — |
AFD54151.1 ran-binding protein 4 [Heterodera glycines]
|
XP_065986628
|
0.060
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0005515
|
GO:0008150_0.941|GO:0003674_0.817|GO:0032502_0.742|GO:0048856_0.742|GO:0003824_0.688|GO:0009653_0.685|GO:0048646_0.676|GO:0051703_0.676|GO:0030435_0.674|GO:0043934_0.674|GO:0099120_0.674|GO:0030587_0.673|GO:0016740_0.669|GO:0140096_0.667|GO:0016772_0.657|GO:0016301_0.654|GO:0004672_0.650|GO:0004712_0.650|GO:0004713_0.650|GO:0016773_0.650
|
IPR001870+217-410+|IPR003877+283-409_286-407+|IPR013320+228-410+|IPR043136+210-416+|IPR044736+268-406+
|
SM00449+283-409+
|
PF00622+286-407+SPRY_domain
|
— | — |
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-6;119-216
|
2.000
|
7-118;217-416
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.604
|
47736.690
|
6.443
|
-0.500
|
31.490
|
11.538
|
57.692
|
42.308
|
16.346
|
15.144
|
40.625
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
magenta
|
darkorange
|
82.254
|
26.551
|
76.421
|
77.312
|
154.693
|
55.409
|
99.793
|
20.004
|
82.591
|
106.597
|
96.309
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
1.293
|
1.405
|
— |
0.970
|
-1.468
|
0.857
|
-1.573
|
2.458
|
— | — | — | — | — |
No JSON data available for plots.