Hg_chrom6_TN10mRNA_12668
Organism: Heterodera glycines Gene Locus: chr6:8030652-8034454 Feature type: polypeptideProtein Sequence
Length: 417
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.781 | 1.506 | 1.046 | 0.165 | 1.679 | 1.906 | 0.628 | 0.959 | 1.705 | 1.069 | 1.562 | 1.552 | 1.332 | 0.231 | 0.636 | 0.925 | 0.747 | 0.436 | 1.107 | 0.846 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom6_TN10gene_11930
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
19-Not_Clustered
|
0.491
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
cytoplasm
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.414
|
0.095
|
0.009
|
0.622
|
0.374
|
0.189
|
0.109
|
0.049
|
0.131
|
0.399
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0000891
|
4.000
|
2.000
|
Hsc_gene_17899.t1;Hsc_gene_17899.t2
|
— | — | — |
AFD54151.1 ran-binding protein 4 [Heterodera glycines]
|
VFQ71076
|
0.110
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0005515
|
GO:0005575_0.651|GO:0110165_0.648|GO:0005622_0.630|GO:0008150_0.617|GO:0043226_0.591|GO:0043229_0.584|GO:0016020_0.573|GO:0005737_0.554|GO:0043227_0.531|GO:0003674_0.525|GO:0043231_0.505
|
IPR001870+217-411+|IPR003877+283-410_286-406+|IPR013320+232-411+|IPR043136+208-417+|IPR044736+268-407+
|
SM00449+283-410+
|
PF00622+286-406+SPRY_domain
|
— | — |
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
58-234
|
2.000
|
1-57;235-417
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.575
|
48111.210
|
5.422
|
-6.000
|
31.175
|
11.031
|
56.115
|
43.885
|
15.348
|
15.827
|
39.808
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
darkgrey
|
grey
|
85.972
|
21.753
|
13.479
|
8.545
|
6.088
|
7.224
|
61.520
|
3.029
|
14.767
|
319.437
|
188.864
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.919
|
-1.485
|
— | — | — |
3.097
|
— |
4.482
|
— | — |
-5.185
|
— | — |
No JSON data available for plots.