Hg_chrom6_TN10mRNA_12669
Organism: Heterodera glycines Gene Locus: chr6:8038646-8039964 Feature type: polypeptideProtein Sequence
Length: 242
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.057 | 0.192 | 3.381 | 0.0 | 1.653 | 0.318 | 1.328 | 0.207 | 0.184 | 0.223 | 0.188 | 0.486 | 0.23 | 0.238 | 0.253 | 5.195 | 0.406 | 0.188 | 0.0 | 0.243 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom6_TN10gene_11931
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
19-Not_Clustered
|
0.854
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
cytoplasm
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.435
|
0.191
|
0.016
|
0.597
|
0.106
|
0.071
|
0.098
|
0.005
|
0.103
|
0.154
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0004445
|
2.000
|
1.000
|
Hsc_gene_9734.t1
|
Hsc_gene_9734.t1
|
— |
P40301.1 Proteasome subunit alpha type-2 [Drosophila melanogaster]
|
CAI7999585.1 Proteasome subunit alpha type-2 [Geodia barretti]
|
No
|
-0.050
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0006511|GO:0019773
|
GO:0005575_0.879|GO:0110165_0.872|GO:0005622_0.805|GO:0043226_0.760|GO:0043229_0.747|GO:0016020_0.729|GO:0008150_0.706|GO:0043227_0.673|GO:0043231_0.656|GO:0005737_0.653|GO:0005634_0.620|GO:0032991_0.545
|
IPR000426+6-28+|IPR029055+2-66_5-40+
|
SM00948+6-28+
|
PF10584+6-28+Proteasome_subunit_A_N-terminal_signature
|
— | — |
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
full
|
1-242
|
0.000
|
— |
9e8n_J
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.949
|
23423.040
|
3.065
|
-62.500
|
31.405
|
2.066
|
72.314
|
27.686
|
2.893
|
28.512
|
80.992
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
darkgrey
|
blue
|
258.699
|
68.179
|
31.933
|
38.705
|
72.460
|
42.800
|
68.198
|
48.880
|
10.314
|
984.891
|
567.215
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-1.331
|
-0.954
|
— |
0.876
|
-0.747
|
0.684
|
— |
0.623
|
-6.693
|
— |
-3.363
|
— | — |
No JSON data available for plots.