Hg_chrom6_TN10mRNA_12670
Organism: Heterodera glycines Gene Locus: chr6:8042246-8047913 Feature type: polypeptideProtein Sequence
Length: 339
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.995 | 0.343 | 0.59 | 0.712 | 0.295 | 1.059 | 0.597 | 2.065 | 0.787 | 2.073 | 0.447 | 1.041 | 2.376 | 1.248 | 1.324 | 1.138 | 0.725 | 1.43 | 1.588 | 0.174 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom6_TN10gene_11932
|
— | — |
1.111
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
2.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
8-Eggs_J4_Males
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
signal_peptide|transmembrane_domain
|
endoplasmic_reticulum
|
— |
PFRRWKTKHRRRKWATPRR
|
89-109
|
0.967
|
— | — | — | — |
0.000
|
— | — |
0.128
|
0.048
|
0.005
|
0.293
|
0.649
|
0.224
|
0.371
|
0.007
|
0.283
|
0.043
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0010828
|
1.000
|
1.000
|
Hsc_gene_17900.t1
|
Hsc_gene_17900.t1
|
— |
P34298.2 Dual oxidase maturation factor 1 [Caenorhabditis elegans]
|
KAI1731806.1 dual oxidase maturation factor domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0005789|GO:0015031|GO:0016020
|
GO:0008150_0.947|GO:0005575_0.909|GO:0110165_0.906|GO:0016020_0.868|GO:0071944_0.837|GO:0005886_0.831|GO:0032501_0.652|GO:0032502_0.595|GO:0048856_0.595|GO:0007275_0.580|GO:0009987_0.525
|
IPR018469+25-273_25-276+
|
— |
PF10204+25-273+Dual_oxidase_maturation_factor
|
— |
PTHR31158+25-276+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
338-339
|
1.000
|
1-337
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.750
|
37917.830
|
10.792
|
22.000
|
18.584
|
15.339
|
36.578
|
63.422
|
13.569
|
5.015
|
48.673
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
purple
|
turquoise
|
505.094
|
1218.347
|
290.340
|
241.481
|
421.179
|
1066.647
|
508.254
|
994.618
|
40.794
|
401.366
|
246.835
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-2.299
|
-2.472
|
— |
0.771
|
1.355
|
-1.059
|
— |
-0.830
|
— | — | — | — | — |
No JSON data available for plots.