Hg_chrom6_TN10mRNA_12671
Organism: Heterodera glycines Gene Locus: chr6:8052129-8054237 Feature type: polypeptideProtein Sequence
Length: 360
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.581 | 2.132 | 1.01 | 0.575 | 1.528 | 1.496 | 0.562 | 0.556 | 1.235 | 1.089 | 1.347 | 1.307 | 1.929 | 0.374 | 0.51 | 1.23 | 0.774 | 0.589 | 0.641 | 1.062 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom6_TN10gene_11933
|
— | — |
1.111
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
2.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
15-Not_Clustered
|
0.864
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
cytoplasm|nucleus
|
— |
KKLLEKFNELEKKQKE
|
— | — | — | — | — | — |
0.000
|
— | — |
0.564
|
0.092
|
0.008
|
0.582
|
0.367
|
0.240
|
0.101
|
0.035
|
0.136
|
0.236
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0000891
|
4.000
|
2.000
|
Hsc_gene_17899.t1;Hsc_gene_17899.t2
|
— | — | — |
AFD54151.1 ran-binding protein 4 [Heterodera glycines]
|
RWA05789
|
0.120
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0005515
|
GO:0008150_0.953|GO:0009987_0.606|GO:0065007_0.547|GO:0050789_0.535|GO:0050794_0.513
|
IPR001870+163-354+|IPR003877+229-353_232-351+|IPR013320+175-354+|IPR043136+162-360+|IPR044736+214-350+|IPR050618+108-351+
|
SM00449+229-353+
|
PF00622+232-351+SPRY_domain
|
— |
PTHR12864+108-351+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-161
|
1.000
|
162-360
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.544
|
41400.300
|
4.781
|
-10.000
|
27.222
|
12.500
|
55.556
|
44.444
|
12.500
|
14.722
|
45.278
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
turquoise
|
grey
|
7.354
|
6.508
|
4.650
|
4.688
|
6.882
|
14.007
|
13.145
|
24.719
|
0.000
|
4.200
|
2.400
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — | — | — | — |
1.042
|
— | — | — | — | — | — | — | — |
No JSON data available for plots.