Hg_chrom6_TN10mRNA_12673
Organism: Heterodera glycines Gene Locus: chr6:8062556-8065691 Feature type: polypeptideProtein Sequence
Length: 480
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.654 | 1.599 | 0.909 | 0.431 | 0.66 | 1.122 | 0.843 | 0.938 | 1.713 | 0.957 | 1.136 | 0.735 | 2.604 | 0.681 | 0.638 | 1.369 | 0.82 | 0.821 | 0.801 | 0.98 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom6_TN10gene_11935
|
— | — |
1.444
|
1.000
|
2.000
|
1.000
|
2.000
|
1.000
|
2.000
|
1.000
|
2.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
25-Eggs_Female
|
0.997
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
signal_peptide
|
cell_membrane
|
— | — |
15-35
|
0.941
|
— | — | — | — |
0.000
|
— | — |
0.179
|
0.044
|
0.006
|
0.282
|
0.241
|
0.408
|
0.192
|
0.050
|
0.576
|
0.272
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0000304
|
6.000
|
3.000
|
Hsc_gene_22683.t1;Hsc_gene_22683.t2;Hsc_gene_9704.t1
|
Hsc_gene_22911.t1;Hsc_gene_24062.t1;Hsc_gene_24064.t1;Hsc_gene_24064.t2;Hsc_gene_24987.t1
|
— | — |
AFD54151.1 ran-binding protein 4 [Heterodera glycines]
|
No
|
-0.040
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0005515
|
GO:0008150_0.762|GO:0005575_0.520|GO:0110165_0.515
|
IPR001870+83-271_269-474+|IPR003877+149-270_152-268_335-473_338-470+|IPR013320+97-271_279-474+|IPR043136+88-281_282-480+|IPR044736+136-267_321-470+|IPR050618+92-270+
|
SM00449+149-270_335-473+
|
PF00622+152-268_338-470+SPRY_domain
|
— |
PTHR12864+92-270+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-480
|
8bv0_D
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.897
|
54005.430
|
9.112
|
12.500
|
21.458
|
15.625
|
47.292
|
52.708
|
12.500
|
8.958
|
49.375
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
cyan
|
244.665
|
1255.648
|
441.151
|
138.525
|
114.295
|
257.869
|
336.065
|
87.158
|
0.000
|
83.892
|
47.939
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-1.741
|
-3.317
|
-1.561
|
-0.311
|
1.188
|
0.388
|
-1.682
|
2.089
|
— |
7.971
|
— | — | — |
No JSON data available for plots.