Hg_chrom6_TN10mRNA_12677
Organism: Heterodera glycines Gene Locus: chr6:8077498-8079829 Feature type: polypeptideProtein Sequence
Length: 332
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.841 | 1.401 | 1.15 | 0.727 | 1.255 | 1.467 | 0.681 | 0.904 | 1.004 | 1.099 | 1.552 | 1.595 | 1.506 | 0.405 | 1.106 | 1.291 | 0.543 | 0.593 | 0.463 | 0.62 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom6_TN10gene_11937
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
5-Not_Clustered
|
0.540
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
cytoplasm|nucleus
|
— |
KKRK
|
— | — | — | — | — | — |
0.000
|
— | — |
0.561
|
0.081
|
0.021
|
0.572
|
0.296
|
0.191
|
0.073
|
0.032
|
0.088
|
0.259
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0000103
|
11.000
|
4.000
|
Hsc_gene_13658.t1;Hsc_gene_17480.t1;Hsc_gene_22734.t1;Hsc_gene_22926.t1
|
Hsc_gene_22734.t1;Hsc_gene_8972.t2
|
— | — |
AFD54151.1 ran-binding protein 4 [Heterodera glycines]
|
KAG5464479
|
0.220
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0005515
|
GO:0008150_0.946|GO:0003674_0.836|GO:0032502_0.777|GO:0048856_0.772|GO:0009653_0.697|GO:0003824_0.681|GO:0048646_0.681|GO:0030435_0.673|GO:0043934_0.673|GO:0030587_0.670|GO:0051703_0.670|GO:0099120_0.670|GO:0140096_0.670|GO:0016740_0.667|GO:0016772_0.657|GO:0016301_0.654|GO:0016773_0.654|GO:0004672_0.650|GO:0004712_0.650|GO:0004713_0.650
|
IPR001870+129-325+|IPR003877+195-324_198-322+|IPR013320+132-325+|IPR043136+122-332+|IPR044736+180-321+|IPR050618+78-325+
|
SM00449+195-324+
|
PF00622+198-322+SPRY_domain
|
— |
PTHR12864+78-325+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-104
|
1.000
|
105-332
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.814
|
37673.620
|
8.751
|
9.000
|
31.325
|
9.940
|
55.422
|
44.578
|
17.470
|
13.855
|
45.783
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
magenta
|
brown
|
57.376
|
80.392
|
100.043
|
69.899
|
138.509
|
63.735
|
68.039
|
56.013
|
1.382
|
33.748
|
19.877
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — |
-0.339
|
-0.408
|
0.955
|
-1.106
|
— | — | — | — |
5.992
|
— | — | — |
No JSON data available for plots.