Hg_chrom6_TN10mRNA_12678
Organism: Heterodera glycines Gene Locus: chr6:8077498-8079829 Feature type: polypeptideProtein Sequence
Length: 333
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.873 | 1.397 | 1.147 | 0.725 | 1.251 | 1.463 | 0.679 | 0.901 | 1.001 | 1.096 | 1.547 | 1.59 | 1.502 | 0.404 | 1.103 | 1.287 | 0.542 | 0.592 | 0.462 | 0.618 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom6_TN10gene_11937
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
5-Not_Clustered
|
0.540
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
cytoplasm|nucleus
|
— |
KKRK
|
— | — | — | — | — | — |
0.000
|
— | — |
0.588
|
0.082
|
0.019
|
0.588
|
0.288
|
0.173
|
0.065
|
0.028
|
0.081
|
0.265
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0000103
|
11.000
|
4.000
|
Hsc_gene_13658.t1;Hsc_gene_17480.t1;Hsc_gene_22734.t1;Hsc_gene_22926.t1
|
Hsc_gene_22734.t1;Hsc_gene_8972.t2
|
— | — |
AFD54151.1 ran-binding protein 4 [Heterodera glycines]
|
KAG5464479
|
0.220
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0005515
|
GO:0008150_0.945|GO:0003674_0.840|GO:0032502_0.776|GO:0048856_0.770|GO:0009653_0.697|GO:0003824_0.682|GO:0048646_0.681|GO:0030435_0.673|GO:0043934_0.673|GO:0051703_0.673|GO:0030587_0.670|GO:0099120_0.670|GO:0140096_0.670|GO:0016740_0.667|GO:0016772_0.657|GO:0016301_0.654|GO:0016773_0.654|GO:0004672_0.650|GO:0004712_0.650|GO:0004713_0.650
|
IPR001870+130-326+|IPR003877+196-325_199-323+|IPR013320+134-326+|IPR043136+123-333+|IPR044736+181-322+|IPR050618+73-326+
|
SM00449+196-325+
|
PF00622+199-323+SPRY_domain
|
— |
PTHR12864+73-326+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-100
|
1.000
|
101-333
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.812
|
37744.700
|
8.751
|
9.000
|
31.231
|
9.910
|
55.255
|
44.745
|
17.417
|
13.814
|
45.946
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
magenta
|
brown
|
57.376
|
80.392
|
100.043
|
69.899
|
138.509
|
63.735
|
68.039
|
56.013
|
1.382
|
33.748
|
19.877
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — |
-0.339
|
-0.408
|
0.955
|
-1.106
|
— | — | — | — |
5.992
|
— | — | — |
No JSON data available for plots.