Hg_chrom6_TN10mRNA_12683
Organism: Heterodera glycines Gene Locus: chr6:8102008-8104582 Feature type: polypeptideProtein Sequence
Length: 345
(Signal peptide: 1-24)
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.539 | 1.82 | 0.685 | 0.8 | 1.787 | 1.412 | 0.38 | 0.87 | 1.675 | 0.979 | 2.723 | 0.853 | 1.208 | 0.502 | 0.237 | 0.787 | 0.95 | 0.571 | 0.446 | 0.682 | 0.0 |
Composition
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom6_TN10gene_11941
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
|
Yes
|
— | — | — | — | — | — | — |
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
secreted
|
nuclear_localization_signal
|
cytoplasm|extracellular
|
nucleus
|
KKTIEKEIKTPKKQKE,KKLHILNCLATDKKQKE
|
— | — | — | — |
1-24
|
0.996
|
1.000
|
0.000
|
0.000
|
0.426
|
0.369
|
0.030
|
0.571
|
0.144
|
0.091
|
0.185
|
0.062
|
0.194
|
0.649
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0000204
|
2.000
|
9.000
|
Hsc_gene_12043.t1;Hsc_gene_12043.t2;Hsc_gene_12109.t1;Hsc_gene_15221.t1;Hsc_gene_17498.t1;Hsc_gene_22916.t1;Hsc_gene_25103.t1;Hsc_gene_2892.t1;Hsc_gene_9693.t1
|
— | — | — | — |
WP_343779899
|
0.370
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — | — | — |
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-165;335-345
|
1.000
|
166-334
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.680
|
39943.000
|
9.742
|
19.000
|
35.362
|
8.986
|
60.000
|
40.000
|
20.870
|
14.493
|
39.420
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — |
grey
|
50.864
|
0.149
|
7.476
|
3.873
|
0.341
|
0.502
|
5.787
|
0.140
|
244.333
|
32.430
|
123.245
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
5.378
|
4.533
|
— |
-3.570
|
— |
3.542
|
— |
5.435
|
— |
-5.790
|
— | — | — |