Hg_chrom6_TN10mRNA_12685
Organism: Heterodera glycines Gene Locus: chr6:8109632-8114065 Feature type: polypeptideProtein Sequence
Length: 740
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.534 | 1.414 | 1.106 | 0.513 | 1.104 | 1.247 | 0.74 | 0.811 | 1.712 | 1.114 | 1.433 | 0.874 | 2.14 | 0.468 | 0.772 | 1.178 | 0.775 | 0.635 | 0.936 | 0.954 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom6_TN10gene_11943
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
7-Not_Clustered
|
0.954
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
signal_peptide
|
cell_membrane
|
— | — |
57-77
|
0.997
|
15-82
|
0.907
|
— | — |
0.000
|
— | — |
0.317
|
0.043
|
0.006
|
0.271
|
0.469
|
0.298
|
0.186
|
0.061
|
0.496
|
0.090
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0000904
|
3.000
|
3.000
|
Hsc_gene_12025.t1;Hsc_gene_12025.t2;Hsc_gene_22914.t1
|
— | — | — |
AFD54151.1 ran-binding protein 4 [Heterodera glycines]
|
No
|
-0.010
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0005515
|
GO:0008150_0.827|GO:0005575_0.608|GO:0110165_0.606|GO:0005622_0.555|GO:0016020_0.554|GO:0009987_0.544|GO:0043226_0.526|GO:0043229_0.512
|
IPR001870+355-543_540-734+|IPR003877+421-542_424-540_607-733_610-731+|IPR013320+365-543_550-734+|IPR043136+361-552_553-740+|IPR044736+408-539_592-730+|IPR050618+293-571+
|
SM00449+421-542_607-733+
|
PF00622+424-540_610-731+SPRY_domain
|
— |
PTHR12864+293-571+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
272-317
|
2.000
|
1-271;318-740
|
8bv0_D
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.751
|
84886.560
|
8.099
|
10.000
|
27.568
|
13.784
|
51.486
|
48.514
|
14.865
|
12.703
|
44.054
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
greenyellow
|
1350.690
|
2435.853
|
2832.973
|
1060.173
|
391.734
|
250.534
|
285.384
|
1529.712
|
448.959
|
2277.662
|
1493.932
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — |
-1.337
|
-1.310
|
-1.468
|
-0.631
|
— |
2.503
|
-2.284
|
— | — | — | — | — |
No JSON data available for plots.