Hg_chrom6_TN10mRNA_12687
Organism: Heterodera glycines Gene Locus: chr6:8121247-8122371 Feature type: polypeptideProtein Sequence
Length: 234
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.497 | 1.69 | 1.166 | 0.442 | 0.855 | 1.425 | 0.865 | 0.641 | 1.899 | 1.097 | 1.36 | 0.754 | 2.018 | 0.247 | 0.785 | 1.099 | 0.631 | 0.777 | 1.315 | 1.131 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom6_TN10gene_11945
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — | — | — |
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
cytoplasm
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.479
|
0.113
|
0.009
|
0.591
|
0.456
|
0.118
|
0.087
|
0.082
|
0.138
|
0.308
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0000430
|
1.000
|
7.000
|
Hsc_gene_13478.t1;Hsc_gene_13478.t2;Hsc_gene_24079.t1;Hsc_gene_7960.t1;Hsc_gene_9694.t1;Hsc_gene_9694.t2;Hsc_gene_9701.t1
|
— | — |
F4HYD7.1 Ran-binding protein M homolog [Arabidopsis thaliana]
|
AFD54151.1 ran-binding protein 4 [Heterodera glycines]
|
VFQ71076
|
0.080
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0005515
|
GO:0008150_0.773|GO:0005575_0.639|GO:0110165_0.639|GO:0005622_0.594|GO:0016020_0.563|GO:0005737_0.560|GO:0009987_0.555|GO:0043226_0.551|GO:0043229_0.545|GO:0043227_0.509|GO:0043231_0.507
|
IPR001870+33-228+|IPR003877+102-227_105-225+|IPR013320+43-228+|IPR043136+29-234+|IPR044736+86-224+|IPR050618+26-225+
|
SM00449+102-227+
|
PF00622+105-225+SPRY_domain
|
— |
PTHR12864+26-225+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-234
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.804
|
26878.580
|
8.606
|
4.500
|
25.641
|
14.103
|
50.000
|
50.000
|
14.103
|
11.538
|
44.444
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — |
grey
|
1.968
|
0.157
|
2.122
|
1.860
|
1.925
|
2.221
|
3.850
|
0.414
|
0.000
|
3.904
|
2.231
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
3.545
|
3.450
|
— | — | — | — | — |
3.352
|
— | — | — | — | — |
No JSON data available for plots.