Hg_chrom6_TN10mRNA_12688
Organism: Heterodera glycines Gene Locus: chr6:8123109-8125726 Feature type: polypeptideProtein Sequence
Length: 482
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.7 | 1.592 | 1.056 | 0.858 | 1.072 | 1.011 | 0.84 | 1.245 | 1.429 | 0.981 | 1.509 | 1.22 | 2.536 | 0.439 | 0.508 | 1.126 | 0.646 | 0.723 | 0.319 | 0.671 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom6_TN10gene_11946
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
25-Eggs_Female
|
0.983
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
cytoplasm|nucleus
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.572
|
0.069
|
0.008
|
0.623
|
0.231
|
0.144
|
0.062
|
0.028
|
0.058
|
0.198
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0000304
|
6.000
|
3.000
|
Hsc_gene_22683.t1;Hsc_gene_22683.t2;Hsc_gene_9704.t1
|
Hsc_gene_23904.t1
|
— | — |
AFD54151.1 ran-binding protein 4 [Heterodera glycines]
|
No
|
-0.090
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0005515
|
GO:0008150_0.768|GO:0005575_0.525|GO:0110165_0.525
|
IPR001870+111-301_295-476+|IPR003877+178-300_181-298_352-475_355-472+|IPR013320+109-301_327-473+|IPR043136+106-315_321-482+|IPR044736+164-297_337-472+|IPR050618+101-313+
|
SM00449+178-300_352-475+
|
PF00622+181-298_355-472+SPRY_domain
|
— |
PTHR12864+101-313+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-33
|
1.000
|
34-482
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.764
|
54355.880
|
7.588
|
7.000
|
27.178
|
14.315
|
49.793
|
50.207
|
14.938
|
12.241
|
47.095
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
magenta
|
23.708
|
46.790
|
75.721
|
20.191
|
15.132
|
16.831
|
41.019
|
19.280
|
0.000
|
15.611
|
8.921
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.466
|
-1.349
|
-1.797
|
— | — |
1.293
|
— |
1.228
|
— |
5.193
|
— | — | — |
No JSON data available for plots.