Hg_chrom6_TN10mRNA_12689
Organism: Heterodera glycines Gene Locus: chr6:8126080-8128143 Feature type: polypeptideProtein Sequence
Length: 385
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.695 | 1.873 | 1.039 | 0.537 | 1.429 | 2.065 | 0.618 | 0.779 | 1.27 | 0.913 | 1.85 | 1.681 | 1.659 | 0.25 | 0.477 | 1.15 | 0.596 | 0.551 | 0.599 | 0.611 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom6_TN10gene_11947
|
— | — |
1.222
|
2.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
2.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
5-Not_Clustered
|
0.645
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
cytoplasm
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.469
|
0.061
|
0.008
|
0.611
|
0.263
|
0.230
|
0.100
|
0.009
|
0.109
|
0.308
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0000104
|
3.000
|
12.000
|
Hsc_gene_1713.t1;Hsc_gene_17904.t1;Hsc_gene_17904.t2;Hsc_gene_17905.t1;Hsc_gene_17905.t2;Hsc_gene_17907.t1;Hsc_gene_17910.t1;Hsc_gene_17913.t1;Hsc_gene_2159.t1;Hsc_gene_24991.t1;Hsc_gene_5401.t1;Hsc_gene_6839.t1
|
— | — | — |
AFD54151.1 ran-binding protein 4 [Heterodera glycines]
|
SAM07272
|
0.030
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0005515
|
GO:0008150_0.946|GO:0009987_0.633|GO:0065007_0.561|GO:0050789_0.548|GO:0050794_0.526
|
IPR001870+186-379+|IPR003877+253-378_256-376+|IPR013320+199-379+|IPR043136+180-385+|IPR044736+238-375+|IPR050618+157-380+
|
SM00449+253-378+
|
PF00622+256-376+SPRY_domain
|
— |
PTHR12864+157-380+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-187
|
1.000
|
188-385
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.724
|
44079.660
|
7.657
|
4.000
|
30.390
|
10.390
|
58.182
|
41.818
|
16.104
|
14.286
|
43.117
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
magenta
|
red
|
95.171
|
65.863
|
134.710
|
93.614
|
156.489
|
54.184
|
67.019
|
20.302
|
21.992
|
177.809
|
111.030
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.799
|
0.369
|
-0.414
|
0.709
|
-1.517
|
— |
-1.517
|
1.863
|
— | — | — | — | — |
No JSON data available for plots.