Hg_chrom6_TN10mRNA_12690
Organism: Heterodera glycines Gene Locus: chr6:8133457-8136334 Feature type: polypeptideProtein Sequence
Length: 394
(Signal peptide: 1-24)
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.679 | 1.948 | 0.6 | 1.575 | 1.607 | 1.367 | 0.332 | 0.761 | 1.918 | 0.857 | 2.5 | 1.045 | 1.058 | 0.781 | 0.259 | 0.58 | 0.791 | 0.654 | 0.39 | 0.746 | 0.0 |
Composition
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom6_TN10gene_11948
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
|
Yes
|
— | — | — | — | — |
17-ppJ2_pJ2
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
secreted
|
nuclear_localization_signal
|
cytoplasm
|
nucleus
|
SKNKDKK,KKTIEKEIKTPKKQKE,KKFNGIEENEQTKDKNK,KKLKKLETYNTFRIKKT
|
— | — | — | — |
1-24
|
0.997
|
1.000
|
0.000
|
0.000
|
0.346
|
0.351
|
0.021
|
0.560
|
0.198
|
0.336
|
0.270
|
0.005
|
0.482
|
0.346
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0000204
|
2.000
|
9.000
|
Hsc_gene_12043.t1;Hsc_gene_12043.t2;Hsc_gene_12109.t1;Hsc_gene_15221.t1;Hsc_gene_17498.t1;Hsc_gene_22916.t1;Hsc_gene_25103.t1;Hsc_gene_2892.t1;Hsc_gene_9693.t1
|
— | — | — |
KAI3421253.1 hypothetical protein GPALN_014879 [Globodera pallida]
|
No
|
0.140
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — | — | — |
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-158;385-394
|
1.000
|
159-384
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.673
|
45290.670
|
9.227
|
22.000
|
32.234
|
8.376
|
54.822
|
45.178
|
19.289
|
12.944
|
42.132
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
brown
|
green
|
138.526
|
0.456
|
22.375
|
16.916
|
2.761
|
1.248
|
2.742
|
0.979
|
377.868
|
304.846
|
336.141
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
5.382
|
5.068
|
— |
-2.634
|
— | — | — | — | — |
-4.297
|
-3.878
|
— | — |