Hg_chrom6_TN10mRNA_12696
Organism: Heterodera glycines Gene Locus: chr6:8199536-8201080 Feature type: polypeptideProtein Sequence
Length: 376
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.711 | 1.546 | 1.015 | 0.642 | 0.842 | 1.227 | 0.475 | 1.197 | 1.655 | 1.366 | 1.007 | 1.095 | 1.625 | 1.125 | 1.248 | 0.874 | 0.872 | 0.604 | 2.25 | 0.391 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom6_TN10gene_11953
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — | — | — |
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
nucleus
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.476
|
0.258
|
0.016
|
0.358
|
0.184
|
0.040
|
0.039
|
0.031
|
0.232
|
0.330
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0000006
|
76.000
|
11.000
|
Hsc_gene_11956.t1;Hsc_gene_11958.t1;Hsc_gene_12023.t1;Hsc_gene_1443.t1;Hsc_gene_17251.t1;Hsc_gene_19549.t1;Hsc_gene_20586.t1;Hsc_gene_24590.t1;Hsc_gene_4483.t1;Hsc_gene_5661.t1;Hsc_gene_9670.t1
|
— | — | — |
KAI3411193.1 hypothetical protein GPALN_003276 [Globodera pallida]
|
WP_219431679
|
0.090
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — | — | — |
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
343-376
|
1.000
|
1-342
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.822
|
43427.950
|
9.204
|
12.500
|
25.798
|
12.500
|
48.670
|
51.330
|
15.160
|
10.638
|
45.479
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — |
cyan
|
4.141
|
0.836
|
2.543
|
3.425
|
2.375
|
2.009
|
17.353
|
5.738
|
0.000
|
5.264
|
3.008
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — |
3.123
|
— |
1.734
|
— | — | — | — | — |
No JSON data available for plots.