Hg_chrom6_TN10mRNA_12697
Organism: Heterodera glycines Gene Locus: chr6:8203626-8204494 Feature type: polypeptideProtein Sequence
Length: 172
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.608 | 2.163 | 1.057 | 0.2 | 0.484 | 0.894 | 1.038 | 0.291 | 1.292 | 1.1 | 1.498 | 1.368 | 2.584 | 0.671 | 0.593 | 1.08 | 0.667 | 0.793 | 0.0 | 1.368 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom6_TN10gene_11954
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
30-Not_Clustered
|
0.801
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
cytoplasm|nucleus
|
— |
KKNFLLFGFAVKQQKK
|
— | — | — | — | — | — |
0.000
|
— | — |
0.595
|
0.217
|
0.033
|
0.625
|
0.341
|
0.137
|
0.087
|
0.115
|
0.227
|
0.424
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0000905
|
4.000
|
2.000
|
Hsc_gene_17471.t1;Hsc_gene_17471.t2
|
— | — | — |
AFD54151.1 ran-binding protein 4 [Heterodera glycines]
|
KAJ3366343
|
0.110
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0005515
|
GO:0008150_0.910|GO:0003674_0.831|GO:0003824_0.728|GO:0032502_0.704|GO:0048856_0.704|GO:0009653_0.678|GO:0016740_0.675|GO:0048646_0.675|GO:0030435_0.670|GO:0030587_0.670|GO:0043934_0.670|GO:0051703_0.670|GO:0099120_0.670|GO:0140096_0.664|GO:0016772_0.657|GO:0016301_0.654|GO:0004672_0.650|GO:0004712_0.650|GO:0004713_0.650|GO:0016773_0.650
|
IPR001870+1-166+|IPR003877+45-165_48-163+|IPR013320+15-166+|IPR043136+7-172+|IPR044736+30-162+|IPR050618+16-162+
|
SM00449+45-165+
|
PF00622+48-163+SPRY_domain
|
— |
PTHR12864+16-162+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-172
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.935
|
19320.060
|
9.904
|
7.500
|
22.093
|
14.535
|
46.512
|
53.488
|
13.372
|
8.721
|
50.000
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
magenta
|
blue
|
76.339
|
2.925
|
11.181
|
12.473
|
11.630
|
8.630
|
3.744
|
3.018
|
0.000
|
313.885
|
179.363
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
1.703
|
1.959
|
— | — | — |
-1.197
|
-1.617
|
— |
-9.100
|
4.498
|
-4.621
|
— | — |
No JSON data available for plots.