Hg_chrom6_TN10mRNA_12700
Organism: Heterodera glycines Gene Locus: chr6:8221256-8236351 Feature type: polypeptideProtein Sequence
Length: 1,572
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.673 | 1.213 | 1.434 | 0.702 | 0.763 | 1.158 | 0.856 | 0.986 | 1.131 | 0.963 | 0.617 | 1.497 | 1.467 | 0.942 | 1.129 | 0.963 | 1.304 | 0.935 | 1.125 | 1.16 | 0.0 |
Composition
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom6_TN10gene_11957
|
— | — |
0.889
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
— |
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
18-Not_Clustered
|
0.889
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
secreted
|
signal_peptide
|
extracellular
|
— | — | — | — | — | — | — |
0.521
|
0.228
|
0.000
|
— |
0.197
|
0.211
|
0.029
|
0.376
|
0.277
|
0.105
|
0.167
|
0.007
|
0.479
|
0.771
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0003174
|
2.000
|
1.000
|
Hsc_gene_26051.t1
|
— | — |
Q9YH85.1 Alpha-tectorin [Gallus gallus]
|
KAI1707227.1 nidogen-like domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0007160
|
GO:0005575_0.917|GO:0110165_0.917|GO:0008150_0.796|GO:0071944_0.756|GO:0009987_0.628|GO:0016020_0.520
|
IPR000436+1281-1312+|IPR001846+1006-1197_1009-1169+|IPR003886+78-266_112-268_112-270+|IPR012674+1415-1545_1425-1538+|IPR051495+35-1395+
|
SM00539+112-270+
|
PF00094+1009-1169+von_Willebrand_factor_type_D_domain|PF06119+78-266+Nidogen-like
|
— |
PTHR13802+35-1395+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
791-976
|
2.000
|
1-790;977-1572
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.564
|
176849.470
|
5.062
|
-29.500
|
24.046
|
12.659
|
48.473
|
51.527
|
11.578
|
12.468
|
53.880
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
brown
|
blue
|
309.599
|
12.266
|
216.124
|
152.290
|
97.300
|
87.173
|
53.989
|
154.478
|
26.875
|
1044.231
|
608.221
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
3.911
|
3.499
|
-0.396
|
-0.679
|
— |
-0.678
|
0.715
|
-1.369
|
-3.160
|
— | — | — | — |