Hg_chrom6_TN10mRNA_12708
Organism: Heterodera glycines Gene Locus: chr6:8276146-8277501 Feature type: polypeptideProtein Sequence
Length: 234
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.391 | 0.894 | 1.088 | 0.442 | 1.425 | 1.425 | 0.509 | 0.855 | 0.855 | 1.502 | 1.23 | 1.508 | 0.831 | 0.247 | 1.483 | 0.549 | 0.771 | 1.036 | 0.986 | 0.88 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom6_TN10gene_11965
|
— | — |
1.111
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
2.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
22-J4_Male
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
cytoplasm|nucleus
|
— | — |
57-80
|
0.997
|
— | — | — | — |
0.000
|
— | — |
0.600
|
0.322
|
0.022
|
0.604
|
0.094
|
0.125
|
0.117
|
0.017
|
0.168
|
0.306
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0010833
|
1.000
|
1.000
|
Hsc_gene_2871.t1
|
Hsc_gene_11937.t1;Hsc_gene_11992.t1;Hsc_gene_13013.t1;Hsc_gene_14128.t1;Hsc_gene_20564.t1;Hsc_gene_24575.t1;Hsc_gene_266.t1;Hsc_gene_2871.t1;Hsc_gene_9989.t1
|
— |
Q20655.1 14-3-3-like protein 2 [Caenorhabditis elegans]
|
APO36911.1 14-3-3 protein [Meloidogyne incognita]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0008150_0.912|GO:0005575_0.849|GO:0110165_0.842|GO:0009987_0.837|GO:0003674_0.730|GO:0005622_0.723|GO:0005488_0.714|GO:0005737_0.649|GO:0065007_0.643|GO:0050789_0.632|GO:0005515_0.626|GO:0051179_0.611|GO:0043226_0.603|GO:0050794_0.585|GO:0016020_0.572
|
IPR000308+1-233_3-228_36-65_83-107_114-136_147-173_174-200_201-230+|IPR023410+4-233_11-228+|IPR036815+1-233_3-229+
|
SM00101+4-233+
|
PF00244+11-228+14-3-3_protein
|
— |
PTHR18860+3-228+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-234
|
9mmr_D
|
STRUCT_HOMOLOG
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.573
|
26665.570
|
8.246
|
4.000
|
31.624
|
8.974
|
49.573
|
50.427
|
17.094
|
14.530
|
44.017
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
turquoise
|
black
|
513.325
|
11.948
|
23.897
|
31.784
|
127.903
|
1464.649
|
68.616
|
1374.226
|
1.896
|
1080.742
|
618.379
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.768
|
1.276
|
0.525
|
1.979
|
3.531
|
-4.403
|
— |
-4.173
|
-9.305
|
4.364
|
— | — | — |
No JSON data available for plots.