Hg_chrom6_TN10mRNA_12712
Organism: Heterodera glycines Gene Locus: chr6:8295248-8298623 Feature type: polypeptideProtein Sequence
Length: 231
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.107 | 0.503 | 0.945 | 0.448 | 1.082 | 1.221 | 0.825 | 0.649 | 0.962 | 1.229 | 1.181 | 2.292 | 0.842 | 0.666 | 0.795 | 1.113 | 0.852 | 1.312 | 0.666 | 1.273 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom6_TN10gene_11969
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
2-Not_Clustered
|
0.676
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_export_signal
|
cytoplasm|nucleus
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.801
|
0.193
|
0.025
|
0.629
|
0.071
|
0.138
|
0.154
|
0.066
|
0.033
|
0.042
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0004445
|
2.000
|
1.000
|
Hsc_gene_9734.t1
|
Hsc_gene_9734.t1
|
— |
Q27488.1 Proteasome subunit alpha type-2 [Caenorhabditis elegans]
|
KAF7639514.1 Proteasome subunit alpha type [Meloidogyne graminicola]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0005839|GO:0006511|GO:0019773|GO:0051603
|
GO:0005575_0.850|GO:0110165_0.834|GO:0005622_0.796|GO:0005737_0.736|GO:0043226_0.686|GO:0016020_0.669|GO:0043229_0.665|GO:0043227_0.596|GO:0043231_0.575|GO:0008150_0.571|GO:0032991_0.562
|
IPR000426+6-28+|IPR001353+33-210+|IPR023332+21-228+|IPR029055+1-231_5-229+|IPR050115+4-210+
|
SM00948+6-28+
|
PF00227+33-210+Proteasome_subunit|PF10584+6-28+Proteasome_subunit_A_N-terminal_signature
|
— |
PTHR11599+4-210+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-231
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.632
|
25489.340
|
7.212
|
1.500
|
24.675
|
9.524
|
44.589
|
55.411
|
12.987
|
11.688
|
50.216
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
magenta
|
grey
|
3113.288
|
2054.594
|
1809.624
|
3500.687
|
3716.333
|
3432.720
|
2644.184
|
2861.944
|
1610.796
|
4905.004
|
3493.201
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.412
|
0.632
|
1.061
|
— | — |
-0.366
|
-0.366
|
— |
-1.706
|
— | — | — | — |
No JSON data available for plots.