Hg_chrom6_TN10mRNA_12713
Organism: Heterodera glycines Gene Locus: chr6:8298880-8299677 Feature type: polypeptideProtein Sequence
Length: 137
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.849 | 0.509 | 1.327 | 0.0 | 2.068 | 1.31 | 0.782 | 0.365 | 0.324 | 0.395 | 1.77 | 1.288 | 0.811 | 0.702 | 0.447 | 1.981 | 1.316 | 0.995 | 1.123 | 0.429 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom6_TN10gene_11970
|
— | — |
1.444
|
1.000
|
1.000
|
1.000
|
2.000
|
2.000
|
2.000
|
1.000
|
2.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
2-pJ2_J3_J4_Female
|
0.991
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
cytoplasm
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.422
|
0.456
|
0.132
|
0.747
|
0.106
|
0.329
|
0.153
|
0.233
|
0.051
|
0.041
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0010834
|
1.000
|
1.000
|
Hsc_gene_9733.t1
|
— | — |
Q9CX34.3 Protein SGT1 homolog [Mus musculus]
|
XP_011186213.2 protein SGT1 homolog [Zeugodacus cucurbitae]
|
No
|
-0.020
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0051087
|
GO:0005575_0.944|GO:0110165_0.941|GO:0005622_0.910|GO:0008150_0.902|GO:0043226_0.874|GO:0043229_0.862|GO:0005737_0.834|GO:0009987_0.769|GO:0016020_0.684|GO:0043227_0.645|GO:0043231_0.633|GO:0065007_0.543
|
IPR007699+49-137_61-134+|IPR044563+28-135+
|
— |
PF05002+61-134+SGS_domain
|
— |
PTHR45862+28-135+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
full
|
1-137
|
0.000
|
— | — | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.565
|
14988.270
|
4.496
|
-7.500
|
34.307
|
6.569
|
63.504
|
36.496
|
14.599
|
19.708
|
55.474
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
grey60
|
tan
|
675.964
|
516.871
|
733.840
|
816.173
|
1178.605
|
1146.696
|
828.254
|
723.232
|
726.303
|
183.740
|
416.267
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.276
|
0.522
|
0.263
|
0.498
|
— |
-0.459
|
-0.769
|
0.338
|
— | — | — | — | — |
No JSON data available for plots.