SCN Proteipedia

Hg_chrom6_TN10mRNA_12714

Organism: Heterodera glycines Gene Locus: chr6:8299929-8304435 Feature type: polypeptide

Protein Sequence

Length: 237

Skip signal peptide

COMPOSITION	Ala	Asn	Asp	Cys	Glu	Gln	Gly	His	Ile	Leu	Lys	Met	Phe	Pro	Arg	Ser	Thr	Val	Trp	Tyr	Xaa
ABUNDANCE	0.687	1.374	1.381	0.727	0.985	0.974	0.603	1.266	1.219	1.368	1.087	1.986	0.938	0.811	1.378	0.603	0.692	1.215	0.974	0.869	0.0

No JSON data available for plots.

Features

GENOMICS	Gene Name	Nested Gene	(host gene)	Average	TN7	TN8	TN10	TN20	TN22	MM26	OP50	PA3	X12
	Hg_chrom6_TN10gene_11971	—	—	1.333	1.000	1.000	1.000	2.000	2.000	2.000	1.000	1.000	1.000

EFFECTORS	SCN putative	SCN known (N)	SCN known (P)	BCN known	BCN putative	Effector Islands	Cluster Name	(score)
	—	—	—	—	—	—	25-Not_Clustered	0.887

SECRETION	Secretion	DL-signals	DL-localization	Localizer	L-nucleus	L-mitochondria	(score)	L-chloroplast	(score)	Signal Peptide	(score_v5)	(score_v6)	(TM_v5)	(TM_v6)	nucleus	mitochondrion	plastid	cytoplasm	endoplasmic_reticulum	lysosome_vacuole	golgi_apparatus	peroxisome	peroxisome	extracellular
	not_secreted	—	cytoplasm	—	—	—	—	—	—	—	—	0.000	—	—	0.396	0.295	0.075	0.594	0.190	0.260	0.125	0.010	0.141	0.207

HOMOLOGY	Orthogroup	(SCN counts)	(BCN counts)	(BCN genes)	BCN hits	C. elegans hits	SP best hit	NR best hit	HGT Donor	HGT Index
	OG0004447	2.000	1.000	Hsc_gene_9732.t1	Hsc_gene_9732.t1;Hsc_gene_9732.t2	—	Q5I0J5.1 MIT domain-containing protein 1 [Rattus norvegicus]	KHN79452.1 MIT domain-containing protein 1 [Toxocara canis]	No	0.000

FUNCTIONAL	TF	GO terms	DeepGoPlus	InterPro	SMART	Pfam	FunFam	Panther
	—	—	GO:0008150_0.933\|GO:0005575_0.883\|GO:0110165_0.883\|GO:0009987_0.865\|GO:0003674_0.846\|GO:0005622_0.840\|GO:0065007_0.808\|GO:0016020_0.788\|GO:0043226_0.783\|GO:0005488_0.778\|GO:0043229_0.775\|GO:0043227_0.752\|GO:0071840_0.736\|GO:0043231_0.734\|GO:0005515_0.733\|GO:0016043_0.729\|GO:0006996_0.696\|GO:0061024_0.685\|GO:0065009_0.683\|GO:0007049_0.681\|GO:0022402_0.681\|GO:0000280_0.680\|GO:0048285_0.680\|GO:0051301_0.679\|GO:0000278_0.676\|GO:0140014_0.676\|GO:1903047_0.676\|GO:0000910_0.674\|GO:0044092_0.674\|GO:0090148_0.674\|GO:0000281_0.670\|GO:0032091_0.670\|GO:0032506_0.670\|GO:0043393_0.670\|GO:0051098_0.670\|GO:0051100_0.670\|GO:0061640_0.670\|GO:0061952_0.670\|GO:1902410_0.670\|GO:0042802_0.669\|GO:0008289_0.660\|GO:0005543_0.655\|GO:0019904_0.654\|GO:0035091_0.650\|GO:0005576_0.584\|GO:0005615_0.584\|GO:0031982_0.572\|GO:0043230_0.563\|GO:0065010_0.562\|GO:0070062_0.562\|GO:1903561_0.562\|GO:0030496_0.540	IPR007330+8-66+\|IPR032341+87-227+\|IPR036181+4-67+\|IPR038113+71-228+\|IPR052817+78-230+	—	PF04212+8-66+MIT_(microtubule_interacting_and_transport)_domain\|PF16565+87-227+Phospholipase_D-like_domain_at_C-terminus_of_MIT	—	PTHR21222+78-230+

SEQUENCE	Protein Sequence
	—

STRUCTURE	Disorder	(regions)	Ordered	(regions)	PDB	(hit type)
	—	—	1.000	1-237	4a5z_D	PARTIAL_DOMAIN

BIOPHYSICS	Inclusion Body	Mol weight	pI	Net Charge	Charged	Aromatic	Polar	Non-polar	Basic	Acidic	Small
	0.627	27195.330	7.708	4.000	29.958	10.127	48.101	51.899	16.456	13.502	47.257

EXPRESSION	Bin13	Bin38	Average	Egg	ppJ2	pJ2	J3	J4	Female	Male	Gland (J2)	Gland (J3)	Gland (J2+J3)
	darkgrey	lightgreen	334.206	568.159	356.877	325.361	333.034	258.048	371.912	290.706	100.153	447.999	298.922

DGE	Egg vs ppJ2	Egg vs pJ2	ppJ2 vs pJ2	pJ2 vs J3	J3 vs J4	J4 vs F	J4 vs M	F vs M	G(J3 vs J2)	G(J2) vs pJ2	G(J3) vs J3	G(J2) lines	G(J3) lines
	-0.901	-0.941	—	—	-0.353	0.538	—	0.498	—	—	—	—	—

No JSON data available for plots.

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